mirror of
https://gitlab.com/pholy/OSCAR-code.git
synced 2025-04-05 10:40:42 +00:00
More work in progress
This commit is contained in:
Phil Olynyk
parent
5ee8feb37c
commit
3055e1fe37
@ -37,8 +37,8 @@ EDFInfo::EDFInfo()
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EDFInfo::~EDFInfo()
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{
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if ( fileData )
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delete fileData;
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// if ( fileData )
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// delete fileData;
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for (auto & s : edfsignals) {
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if (s.dataArray)
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@ -69,7 +69,7 @@ QByteArray * EDFInfo::Open(const QString & name)
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}
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fi.close();
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if (fileData->size() <= EDFHeaderSize) {
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delete fileData;
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fileData->clear();;
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qDebug() << "EDFInfo::Open() File too short " << name;
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sleep(1);
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return nullptr;
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@ -86,8 +86,7 @@ bool EDFInfo::parseHeader( EDFHeaderRaw *hdrPtr )
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if (!ok) {
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qWarning() << "EDFInfo::Parse() Bad Version " << filename;
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sleep(1);
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delete fileData;
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fileData = nullptr;
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fileData->clear();
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return false;
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}
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@ -106,8 +105,7 @@ bool EDFInfo::parseHeader( EDFHeaderRaw *hdrPtr )
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if (!ok) {
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qWarning() << "EDFInfo::Parse() Bad header byte count " << filename;
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sleep(1);
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delete fileData;
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fileData = nullptr;
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fileData->clear();
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return false;
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}
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edfHdr.reserved44=QString::fromLatin1(hdrPtr->reserved, 44).trimmed();
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@ -115,24 +113,21 @@ bool EDFInfo::parseHeader( EDFHeaderRaw *hdrPtr )
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if (!ok) {
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qWarning() << "EDFInfo::Parse() Bad data record count " << filename;
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sleep(1);
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delete fileData;
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fileData = nullptr;
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fileData->clear();
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return false;
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}
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edfHdr.duration_Seconds = QString::fromLatin1(hdrPtr->dur_data_records, 8).toDouble(&ok);
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if (!ok) {
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qWarning() << "EDFInfo::Parse() Bad duration " << filename;
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sleep(1);
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delete fileData;
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fileData = nullptr;
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fileData->clear();
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return false;
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}
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edfHdr.num_signals = QString::fromLatin1(hdrPtr->num_signals, 4).toLong(&ok);
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if (!ok) {
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qWarning() << "EDFInfo::Parse() Bad number of signals " << filename;
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sleep(1);
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delete fileData;
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fileData = nullptr;
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fileData->clear();
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return false;
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}
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return true;
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@ -172,8 +167,7 @@ bool EDFInfo::Parse(QByteArray * fileData )
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if (eof) {
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qWarning() << "EDFInfo::Parse() Early end of file " << filename;
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sleep(1);
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delete fileData;
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fileData = nullptr;
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fileData->clear();
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return false;
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}
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}
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@ -211,8 +205,7 @@ bool EDFInfo::Parse(QByteArray * fileData )
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if (eof) {
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qWarning() << "EDFInfo::Parse() Early end of file " << filename;
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sleep(1);
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delete fileData;
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fileData = nullptr;
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fileData->clear();
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return false;
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}
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@ -228,8 +221,7 @@ bool EDFInfo::Parse(QByteArray * fileData )
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// so abort and let the user clean up the corrupted file themselves
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qWarning() << "EDFInfo::Parse(): " << filename << " is too short!";
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sleep(1);
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delete fileData;
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fileData = nullptr;
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fileData->clear();
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return false;
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}
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@ -256,8 +248,7 @@ bool EDFInfo::Parse(QByteArray * fileData )
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}
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}
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}
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delete fileData;
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fileData = nullptr;
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fileData->clear();
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return true;
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}
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@ -282,6 +273,7 @@ EDFHeaderQT * EDFInfo::GetHeader( const QString & name)
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if ( ! parseHeader( hdrPtr ) )
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return nullptr;
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fileData->clear();
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return & edfHdr;
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}
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@ -140,12 +140,12 @@ bool matchSignal(ChannelID ch, const QString & name)
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}
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// This function parses a list of STR files and creates a date ordered map of individual records
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void ResmedLoader::ParseSTR(Machine *mach, QMap<QDate, STRFile> & STRmap)
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void ResmedLoader::ParseSTR(Machine *mach, QMap<QDate, STRFile> & STRmap, QDate firstImport)
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{
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Q_UNUSED(mach)
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QDateTime ignoreBefore = p_profile->session->ignoreOlderSessionsDate();
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bool ignoreOldSessions = p_profile->session->ignoreOlderSessions();
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// QDateTime ignoreBefore = p_profile->session->ignoreOlderSessionsDate();
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// bool ignoreOldSessions = p_profile->session->ignoreOlderSessions();
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int totalRecs = 0;
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for (auto it=STRmap.begin(), end=STRmap.end(); it != end; ++it) {
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@ -167,10 +167,15 @@ void ResmedLoader::ParseSTR(Machine *mach, QMap<QDate, STRFile> & STRmap)
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QDate date = str.edfHdr.startdate_orig.date(); // each STR.edf record starts at 12 noon
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int size = str.GetNumDataRecords();
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QDate lastDay = date.addDays(size-1);
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qDebug() << "Parsing" << strfile << date.toString() << size << str.GetNumSignals();
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qDebug() << "Last day is" << date.addDays(size-1).toString();
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sleep(1);
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qDebug() << "Last day is" << lastDay;
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if ( lastDay < firstImport ) {
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qDebug() << "LastDay before firstImport, skipping" << file.filename;
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continue;
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}
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// ResMed and their consistent naming and spacing... :/
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EDFSignal *maskon = str.lookupLabel("Mask On");
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@ -189,12 +194,12 @@ void ResmedLoader::ParseSTR(Machine *mach, QMap<QDate, STRFile> & STRmap)
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emit setProgressValue(++currentRec);
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QCoreApplication::processEvents();
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if (ignoreOldSessions) {
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if (date < ignoreBefore.date()) {
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qDebug() << "Skipping" << date.toString() << "Before" << ignoreBefore.date().toString();
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// if (ignoreOldSessions) {
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if (date < firstImport) {
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// qDebug() << "Skipping" << date.toString() << "Before" << ignoreBefore.date().toString();
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continue;
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}
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}
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// }
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auto rit = resdayList.find(date);
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if (rit != resdayList.end()) {
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@ -221,8 +226,8 @@ void ResmedLoader::ParseSTR(Machine *mach, QMap<QDate, STRFile> & STRmap)
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rit = resdayList.insert(date, ResMedDay());
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qDebug() << "Setting up STRRecord for" << date.toString();
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sleep(1);
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// qDebug() << "Setting up STRRecord for" << date.toString();
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// sleep(1);
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STRRecord &R = rit.value().str;
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uint timestamp = QDateTime(date,QTime(12,0,0)).toTime_t();
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@ -591,12 +596,12 @@ void ResmedLoader::ParseSTR(Machine *mach, QMap<QDate, STRFile> & STRmap)
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if ((sig = str.lookupLabel("S.Tube"))) {
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R.s_Tube = EventDataType(sig->dataArray[rec]) * sig->gain + sig->offset;
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}
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qDebug() << "Finished" << date.toString();
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sleep(1);
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// qDebug() << "Finished" << date.toString();
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// sleep(1);
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}
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}
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qDebug() << "Finished ParseSTR";
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sleep(3);
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// qDebug() << "Finished ParseSTR";
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// sleep(3);
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}
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ResmedLoader::ResmedLoader() {
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@ -648,6 +653,46 @@ bool ResmedLoader::Detect(const QString & givenpath)
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return true;
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}
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QHash<QString, QString> parseIdentLine( const QString line, MachineInfo * info)
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{
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QHash<QString, QString> hash;
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if (!line.isEmpty()) {
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QString key = line.section(" ", 0, 0).section("#", 1);
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QString value = line.section(" ", 1);
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if (key == "SRN") { // Serial Number
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info->serial = value;
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} else if (key == "PNA") { // Product Name
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value.replace("_"," ");
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if (value.contains(STR_ResMed_S9)) {
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value.replace(STR_ResMed_S9, "");
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info->series = STR_ResMed_S9;
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} else if (value.contains(STR_ResMed_AirSense10)) {
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value.replace(STR_ResMed_AirSense10, "");
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info->series = STR_ResMed_AirSense10;
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} else if (value.contains(STR_ResMed_AirCurve10)) {
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value.replace(STR_ResMed_AirCurve10, "");
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info->series = STR_ResMed_AirCurve10;
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}
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value.replace("(","");
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value.replace(")","");
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if (value.contains("Adapt", Qt::CaseInsensitive)) {
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if (!value.contains("VPAP")) {
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value.replace("Adapt", QObject::tr("VPAP Adapt"));
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}
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}
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info->model = value.trimmed();
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} else if (key == "PCD") { // Product Code
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info->modelnumber = value;
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}
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hash[key] = value;
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}
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return hash;
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}
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MachineInfo ResmedLoader::PeekInfo(const QString & path)
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{
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@ -665,39 +710,7 @@ MachineInfo ResmedLoader::PeekInfo(const QString & path)
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// Parse # entries into idmap.
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while (!f.atEnd()) {
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QString line = f.readLine().trimmed();
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if (!line.isEmpty()) {
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QString key = line.section(" ", 0, 0).section("#", 1);
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QString value = line.section(" ", 1);
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if (key == "SRN") { // Serial Number
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info.serial = value;
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} else if (key == "PNA") { // Product Name
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value.replace("_"," ");
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if (value.contains(STR_ResMed_S9)) {
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value.replace(STR_ResMed_S9, "");
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info.series = STR_ResMed_S9;
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} else if (value.contains(STR_ResMed_AirSense10)) {
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value.replace(STR_ResMed_AirSense10, "");
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info.series = STR_ResMed_AirSense10;
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} else if (value.contains(STR_ResMed_AirCurve10)) {
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value.replace(STR_ResMed_AirCurve10, "");
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info.series = STR_ResMed_AirCurve10;
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}
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value.replace("(","");
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value.replace(")","");
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if (value.contains("Adapt", Qt::CaseInsensitive)) {
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if (!value.contains("VPAP")) {
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value.replace("Adapt", QObject::tr("VPAP Adapt"));
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}
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}
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info.model = value.trimmed();
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} else if (key == "PCD") { // Product Code
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info.modelnumber = value;
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}
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}
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QHash<QString, QString> hash = parseIdentLine( line, & info );
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}
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return info;
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@ -948,7 +961,7 @@ EDFduration getEDFDuration(const QString & filename)
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///////////////////////////////////////////////////////////////////////////////////////////
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// Sorted EDF files that need processing into date records according to ResMed noon split
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///////////////////////////////////////////////////////////////////////////////////////////
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int ResmedLoader::scanFiles(Machine * mach, const QString & datalog_path)
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int ResmedLoader::scanFiles(Machine * mach, const QString & datalog_path, QDate firstImport)
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{
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QTime time;
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@ -988,8 +1001,8 @@ int ResmedLoader::scanFiles(Machine * mach, const QString & datalog_path)
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QFileInfoList dirlist = dir.entryInfoList();
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int dirlistSize = dirlist.size();
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QDateTime ignoreBefore = p_profile->session->ignoreOlderSessionsDate();
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bool ignoreOldSessions = p_profile->session->ignoreOlderSessions();
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// QDateTime ignoreBefore = p_profile->session->ignoreOlderSessionsDate();
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// bool ignoreOldSessions = p_profile->session->ignoreOlderSessions();
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// Scan for any sub folders and create files lists
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for (int i = 0; i < dirlistSize ; i++) {
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@ -1004,13 +1017,13 @@ int ResmedLoader::scanFiles(Machine * mach, const QString & datalog_path)
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continue;
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}
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} else if (len == 8) { // test directory date
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if (ignoreOldSessions) {
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QDateTime dirDate = QDateTime().fromString(filename, "yyyyMMdd");
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if (dirDate.date() < ignoreBefore.date()) {
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// if (ignoreOldSessions) {
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QDate dirDate = QDate().fromString(filename, "yyyyMMdd");
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if (dirDate < firstImport) {
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qDebug() << "Skipping directory - ignore before " << filename;
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continue;
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}
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}
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// }
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} else {
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qDebug() << "Skipping directory - bad name size " << filename;
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continue;
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@ -1079,10 +1092,10 @@ int ResmedLoader::scanFiles(Machine * mach, const QString & datalog_path)
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date = date.addDays(-1);
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}
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if (ignoreOldSessions) {
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if (date < ignoreBefore.date())
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// if (ignoreOldSessions) {
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if (date < firstImport)
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continue;
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}
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// }
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// Chop off the .gz component if it exists, it's not needed at this stage
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if (filename.endsWith(STR_ext_gz)) {
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@ -1630,48 +1643,50 @@ bool parseIdentTGT( QString path, MachineInfo * info, QHash<QString, QString> &
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// Parse # entries into idmap.
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while (!f.atEnd()) {
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QString line = f.readLine().trimmed();
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QHash<QString, QString> hash = parseIdentLine( line, info );
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idmap.unite(hash);
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if (!line.isEmpty()) {
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QString key = line.section(" ", 0, 0).section("#", 1);
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QString value = line.section(" ", 1);
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if (key == "SRN") { // Serial Number
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info->serial = value;
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qDebug() << "Serial # is >" << value << "<";
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continue;
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} else if (key == "PNA") { // Product Name
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qDebug() << "Prouct Name is >" << value << "<";
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value.replace("_"," ");
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if (value.contains(STR_ResMed_S9)) {
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value.replace(STR_ResMed_S9, "");
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info->series = STR_ResMed_S9;
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} else if (value.contains(STR_ResMed_AirSense10)) {
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value.replace(STR_ResMed_AirSense10, "");
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info->series = STR_ResMed_AirSense10;
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} else if (value.contains(STR_ResMed_AirCurve10)) {
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value.replace(STR_ResMed_AirCurve10, "");
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info->series = STR_ResMed_AirCurve10;
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}
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value.replace("(","");
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value.replace(")","");
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if (value.contains("Adapt", Qt::CaseInsensitive)) {
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if (!value.contains("VPAP")) {
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value.replace("Adapt", QObject::tr("VPAP Adapt"));
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}
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}
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info->model = value.trimmed();
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continue;
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} else if (key == "PCD") { // Product Code
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qDebug() << "Prouct Code is >" << value << "<";
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info->modelnumber = value;
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continue;
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}
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idmap[key] = value;
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}
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// if (!line.isEmpty()) {
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// QString key = line.section(" ", 0, 0).section("#", 1);
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// QString value = line.section(" ", 1);
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//
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// if (key == "SRN") { // Serial Number
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// info->serial = value;
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// qDebug() << "Serial # is >" << value << "<";
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// continue;
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//
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// } else if (key == "PNA") { // Product Name
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// qDebug() << "Prouct Name is >" << value << "<";
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// value.replace("_"," ");
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// if (value.contains(STR_ResMed_S9)) {
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// value.replace(STR_ResMed_S9, "");
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// info->series = STR_ResMed_S9;
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// } else if (value.contains(STR_ResMed_AirSense10)) {
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// value.replace(STR_ResMed_AirSense10, "");
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// info->series = STR_ResMed_AirSense10;
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// } else if (value.contains(STR_ResMed_AirCurve10)) {
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// value.replace(STR_ResMed_AirCurve10, "");
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// info->series = STR_ResMed_AirCurve10;
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// }
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// value.replace("(","");
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// value.replace(")","");
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//
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// if (value.contains("Adapt", Qt::CaseInsensitive)) {
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// if (!value.contains("VPAP")) {
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// value.replace("Adapt", QObject::tr("VPAP Adapt"));
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// }
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// }
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// info->model = value.trimmed();
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// continue;
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//
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// } else if (key == "PCD") { // Product Code
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// qDebug() << "Prouct Code is >" << value << "<";
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// info->modelnumber = value;
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// continue;
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// }
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//
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// idmap[key] = value;
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// }
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}
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f.close();
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@ -1973,7 +1988,7 @@ int ResmedLoader::Open(const QString & dirpath)
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// Build a Date map of all records in STR.edf files, populating ResDayList
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///////////////////////////////////////////////////////////////////////////////////
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ParseSTR(mach, STRmap ); // , firstImportDay);
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ParseSTR(mach, STRmap, firstImportDay);
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// We are done with the Parsed STR EDF objects, so delete them
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for (auto it=STRmap.begin(), end=STRmap.end(); it != end; ++it) {
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@ -2026,7 +2041,7 @@ int ResmedLoader::Open(const QString & dirpath)
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qDebug() << "Starting scan of DATALOG";
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sleep(1);
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scanFiles(mach, datalogPath ); // , firstImportDay);
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scanFiles(mach, datalogPath, firstImportDay);
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if (isAborted())
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return 0;
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@ -2206,11 +2221,11 @@ bool ResmedLoader::LoadCSL(Session *sess, const QString & path)
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// Process event annotation records
|
||||
qDebug() << "File has " << edf.annotations.size() << "annotation vectors";
|
||||
int vec = 1;
|
||||
// int vec = 1;
|
||||
for (auto annoVec = edf.annotations.begin(); annoVec != edf.annotations.end(); annoVec++ ) {
|
||||
qDebug() << "Vector " << vec++ << " has " << annoVec->size() << " annotations";
|
||||
// qDebug() << "Vector " << vec++ << " has " << annoVec->size() << " annotations";
|
||||
for (auto anno = annoVec->begin(); anno != annoVec->end(); anno++ ) {
|
||||
qDebug() << "Offset: " << anno->offset << " Duration: " << anno->duration << " Text: " << anno->text;
|
||||
// qDebug() << "Offset: " << anno->offset << " Duration: " << anno->duration << " Text: " << anno->text;
|
||||
double tt = edf.startdate + qint64(anno->offset*1000.0);
|
||||
|
||||
if ( ! anno->text.isEmpty()) {
|
||||
@ -2228,7 +2243,7 @@ bool ResmedLoader::LoadCSL(Session *sess, const QString & path)
|
||||
} else {
|
||||
qDebug() << "Split csr event flag in " << edf.filename;
|
||||
}
|
||||
} else if (anno->text != "recording starts") {
|
||||
} else if (anno->text != "Recording starts") {
|
||||
qDebug() << "Unobserved ResMed CSL annotation field: " << anno->text;
|
||||
}
|
||||
}
|
||||
@ -2283,11 +2298,11 @@ bool ResmedLoader::LoadEVE(Session *sess, const QString & path)
|
||||
|
||||
// Process event annotation records
|
||||
qDebug() << "File has " << edf.annotations.size() << "annotation vectors";
|
||||
int vec = 1;
|
||||
// int vec = 1;
|
||||
for (auto annoVec = edf.annotations.begin(); annoVec != edf.annotations.end(); annoVec++ ) {
|
||||
qDebug() << "Vector " << vec++ << " has " << annoVec->size() << " annotations";
|
||||
// qDebug() << "Vector " << vec++ << " has " << annoVec->size() << " annotations";
|
||||
for (auto anno = annoVec->begin(); anno != annoVec->end(); anno++ ) {
|
||||
qDebug() << "Offset: " << anno->offset << " Duration: " << anno->duration << " Text: " << anno->text;
|
||||
// qDebug() << "Offset: " << anno->offset << " Duration: " << anno->duration << " Text: " << anno->text;
|
||||
double tt = edf.startdate + qint64(anno->offset*1000.0);
|
||||
|
||||
if ( ! anno->text.isEmpty()) {
|
||||
@ -2317,7 +2332,7 @@ bool ResmedLoader::LoadEVE(Session *sess, const QString & path)
|
||||
if (sess->checkInside(tt))
|
||||
CA->AddEvent(tt, anno->duration);
|
||||
} else {
|
||||
if (anno->text != "recording starts") {
|
||||
if (anno->text != "Recording starts") {
|
||||
qDebug() << "Unobserved ResMed annotation field: " << anno->text;
|
||||
}
|
||||
}
|
||||
|
||||
@ -349,10 +349,10 @@ class ResmedLoader : public CPAPLoader
|
||||
|
||||
protected:
|
||||
//! \brief The STR.edf file is a unique edf file with many signals
|
||||
void ParseSTR(Machine *, QMap<QDate, STRFile> &);
|
||||
void ParseSTR(Machine *, QMap<QDate, STRFile> &, QDate);
|
||||
|
||||
//! \brief Scan for new files to import, group into sessions and add to task que
|
||||
int scanFiles(Machine * mach, const QString & datalog_path);
|
||||
int scanFiles(Machine * mach, const QString & datalog_path, QDate firstImport);
|
||||
|
||||
//! \brief Write a backup copy to the backup path
|
||||
QString backup(const QString & file, const QString & backup_path);
|
||||
|
||||
Loading…
Reference in New Issue
Block a user