chris/OSCAR-code
1
0
Fork 0
mirror of https://gitlab.com/pholy/OSCAR-code.git synced 2025-04-05 10:40:42 +00:00
Code Issues Packages Projects Releases Wiki Activity

pick up missing STR settings on ResMed reimport, add some profiling stuff and better nosettings handling

Browse Source
This commit is contained in:
Mark Watkins 2018-05-07 02:59:50 +10:00
parent 0583675641
commit 80d9948ad5
12 changed files with 206 additions and 42 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

2
sleepyhead/SleepLib/common.cpp
View File

@ -596,7 +596,7 @@ QByteArray gUncompress(const QByteArray &data)
int ret;
z_stream strm;
static const int CHUNK_SIZE = 1024;
static const int CHUNK_SIZE = 1048576;
char out[CHUNK_SIZE];
/* allocate inflate state */

14
sleepyhead/SleepLib/day.cpp
View File

@ -1046,6 +1046,20 @@ EventDataType Day::count(ChannelID code)
return total;
}
bool Day::noSettings(Machine * mach)
{
for (auto & sess : sessions) {
if ((mach == nullptr) && sess->noSettings()) {
// If this day generally has just summary data.
return true;
} else if ((mach == sess->machine()) && sess->noSettings()) {
// Focus only on machine mach
return true;
}
}
return false;
}
bool Day::summaryOnly(Machine * mach)
{
for (auto & sess : sessions) {

3
sleepyhead/SleepLib/day.h
View File

@ -190,6 +190,9 @@ class Day
//! \brief Check if day contains SummaryOnly records
bool summaryOnly(Machine * mach = nullptr);
//! \brief Check if day has missing Summary/Settings records
bool noSettings(Machine * mach = nullptr);
//! \brief Finds and returns the index of a session, otherwise -1 if it's not there
int find(Session *sess) { return sessions.indexOf(sess); }

25
sleepyhead/SleepLib/event.cpp
View File

@ -1,4 +1,4 @@
/* SleepLib Event Class Implementation
/* SleepLib Event Class Implementation
*
* Copyright (c) 2011-2018 Mark Watkins <mark@jedimark.net>
*
@ -162,27 +162,24 @@ void EventList::AddWaveform(qint64 start, qint16 *data, int recs, qint64 duratio
// EventStoreType *edata = m_data.data();
EventStoreType raw;
// qint16 *ep = data + recs;
qint16 *sp = data;
const qint16 *sp = data;
const qint16 *ep = data + recs;
EventStoreType *dp = (EventStoreType *)m_data.data()+r;
// EventStoreType *dp = &edata[r];
if (m_update_minmax) {
EventDataType min = m_min, max = m_max, val, gain = m_gain;
for (int i=0; i < recs; ++i) {
m_data[r++] = raw = *sp++;
val = EventDataType(raw) * gain + m_offset;
memcpy(dp, sp, recs*2);
for (sp = data; sp < ep; ++sp) {
// *dp++ = raw = *sp;
val = EventDataType(*sp) * gain + m_offset;
if (min > val) { min = val; }
if (max < val) { max = val; }
}
// for (sp = data; sp < ep; ++sp) {
// *dp++ = raw = *sp;
// val = EventDataType(raw) * gain + m_offset;
// if (min > val) { min = val; }
// if (max < val) { max = val; }
// }
m_min = min;
m_max = max;

2
sleepyhead/SleepLib/event.h
View File

@ -1,4 +1,4 @@
/* SleepLib Event Class Header
/* SleepLib Event Class Header
*
* Copyright (C) 2011-2018 Mark Watkins <mark@jedimark.net>
*

3
sleepyhead/SleepLib/loader_plugins/edfparser.cpp
View File

@ -228,7 +228,7 @@ bool EDFParser::Open(const QString & name)
}
if (name.endsWith(STR_ext_gz)) {
filename = name.mid(0, -3); // DoubleCheck: why am I cropping the extension? this is used for debugging
filename = name; //name.mid(0, -3); // DoubleCheck: why am I cropping the extension? this is used for debugging
// Open and decempress file
data = gUncompress(fi.readAll());
@ -243,7 +243,6 @@ bool EDFParser::Open(const QString & name)
if (filesize > EDFHeaderSize) {
header = (EDFHeader *)data.constData();
//memcpy((char *)&header, (char *)data.constData(), sizeof(EDFHeader));
buffer = (char *)data.constData() + EDFHeaderSize;
datasize = filesize - EDFHeaderSize;
} else goto badfile;

1
sleepyhead/SleepLib/loader_plugins/prs1_loader.cpp
View File

@ -3165,7 +3165,6 @@ QList<PRS1DataChunk *> PRS1Loader::ParseFile(const QString & path)
int cruft = 0;
int firstsession = 0;
int extra_bytes = 0;
int htype,family,familyVersion,ext,header_size = 0;
quint8 achk=0;
quint32 sessionid=0, timestamp=0;

146
sleepyhead/SleepLib/loader_plugins/resmed_loader.cpp
View File

@ -845,6 +845,10 @@ ResmedLoader::ResmedLoader()
m_pixmaps[STR_ResMed_AirCurve10] = QPixmap(RM10C_ICON);
m_pixmap_paths[STR_ResMed_AirCurve10] = RM10C_ICON;
m_type = MT_CPAP;
timeInTimeDelta = timeInLoadBRP = timeInLoadPLD = timeInLoadEVE = 0;
timeInLoadCSL = timeInLoadSAD = timeInEDFParser = timeInEDFOpen = timeInAddWaveform = 0;
}
ResmedLoader::~ResmedLoader()
{
@ -1502,8 +1506,7 @@ int ResmedLoader::scanFiles(Machine * mach, const QString & datalog_path)
#endif
return resdayList.size();
}
/*// Check for duplicates
} /*// Check for duplicates
if (newfiles.contains(filename)) {
// Not sure what to do with it.. delete it? check compress status and delete the other one?
// Either way we don't want to process so skip it
@ -2222,7 +2225,7 @@ void ResDayTask::run()
}
}
sess->settings[CPAP_BrokenSummary] = true;
sess->setNoSettings(true);
if (!foundprev) {
// We have no Summary or Settings data... we need to do something to indicate this, and detect the mode
@ -2593,6 +2596,18 @@ int ResmedLoader::Open(const QString & dirpath)
}
reimporting = true;
} else if (day->noSettings(mach) && resday.str.date.isValid()) {
// STR is present now, it wasn't before... we don't need to trash the files, but we do want the official settings.
// Do it right here
for (auto & sess : day->sessions) {
if (sess->machine() != mach) continue;
qDebug() << "Adding STR.edf information to session" << sess->session();
StoreSettings(sess, resday.str);
sess->setNoSettings(false);
sess->SetChanged(true);
sess->StoreSummary();
}
} else {
continue;
}
@ -2722,7 +2737,7 @@ int ResmedLoader::Open(const QString & dirpath)
{
qint64 totalbytes = 0;
qint64 totalns = 0;
qDebug() << "Time Delta Efficiency Information";
qDebug() << "Performance / Efficiency Information";
for (auto it = channel_efficiency.begin(), end=channel_efficiency.end(); it != end; it++) {
ChannelID code = it.key();
@ -2736,8 +2751,17 @@ int ResmedLoader::Open(const QString & dirpath)
QString::number(qAbs(value)) + " bytes and took " + QString::number(secs, 'f', 4) + "s";
}
qDebug() << "Total toTimeDelta function usage:" << totalbytes << "in" << double(
totalns) / 1000000000.0 << "seconds";
qDebug() << "Total toTimeDelta function usage:" << totalbytes << "in" << double(totalns) / 1000000000.0 << "seconds";
qDebug() << "Total CPU time in EDF Open" << timeInEDFOpen;
qDebug() << "Total CPU time in EDF Parser" << timeInEDFParser;
qDebug() << "Total CPU time in LoadBRP" << timeInLoadBRP;
qDebug() << "Total CPU time in LoadPLD" << timeInLoadPLD;
qDebug() << "Total CPU time in LoadSAD" << timeInLoadSAD;
qDebug() << "Total CPU time in LoadEVE" << timeInLoadEVE;
qDebug() << "Total CPU time in LoadCSL" << timeInLoadCSL;
qDebug() << "Total CPU time in (BRP) AddWaveform" << timeInAddWaveform;
qDebug() << "Total CPU time in TimeDelta function" << timeInTimeDelta;
}
#endif
@ -2822,9 +2846,21 @@ QString ResmedLoader::backup(const QString & fullname, const QString & backup_pa
bool ResmedLoader::LoadCSL(Session *sess, const QString & path)
{
#ifdef DEBUG_EFFICIENCY
QTime time;
time.start();
#endif
ResMedEDFParser edf(path);
#ifdef DEBUG_EFFICIENCY
int edfopentime = time.elapsed();
time.start();
#endif
if (!edf.Parse())
return false;
#ifdef DEBUG_EFFICIENCY
int edfparsetime = time.elapsed();
time.start();
#endif
QString t;
@ -2961,15 +2997,34 @@ bool ResmedLoader::LoadCSL(Session *sess, const QString & path)
}
Q_UNUSED(duration)
#ifdef DEBUG_EFFICIENCY
timeMutex.lock();
timeInLoadCSL += time.elapsed();
timeInEDFOpen += edfopentime;
timeInEDFParser += edfparsetime;
timeMutex.unlock();
#endif
return true;
}
bool ResmedLoader::LoadEVE(Session *sess, const QString & path)
{
#ifdef DEBUG_EFFICIENCY
QTime time;
time.start();
#endif
ResMedEDFParser edf(path);
#ifdef DEBUG_EFFICIENCY
int edfopentime = time.elapsed();
time.start();
#endif
if (!edf.Parse())
return false;
#ifdef DEBUG_EFFICIENCY
int edfparsetime = time.elapsed();
time.start();
#endif
QString t;
@ -3115,18 +3170,38 @@ bool ResmedLoader::LoadEVE(Session *sess, const QString & path)
}
}
#ifdef DEBUG_EFFICIENCY
timeMutex.lock();
timeInLoadEVE += time.elapsed();
timeInEDFOpen += edfopentime;
timeInEDFParser += edfparsetime;
timeMutex.unlock();
#endif
return true;
}
bool ResmedLoader::LoadBRP(Session *sess, const QString & path)
{
#ifdef DEBUG_EFFICIENCY
QTime time;
time.start();
#endif
ResMedEDFParser edf(path);
#ifdef DEBUG_EFFICIENCY
int edfopentime = time.elapsed();
time.start();
#endif
if (!edf.Parse())
return false;
#ifdef DEBUG_EFFICIENCY
int edfparsetime = time.elapsed();
time.start();
int AddWavetime = 0;
#endif
sess->updateFirst(edf.startdate);
QTime time2;
qint64 duration = edf.GetNumDataRecords() * edf.GetDuration();
sess->updateLast(edf.startdate + duration);
@ -3158,7 +3233,14 @@ bool ResmedLoader::LoadBRP(Session *sess, const QString & path)
double rate = double(duration) / double(recs);
EventList *a = sess->AddEventList(code, EVL_Waveform, es.gain, es.offset, 0, 0, rate);
a->setDimension(es.physical_dimension);
#ifdef DEBUG_EFFICIENCY
time2.start();
#endif
a->AddWaveform(edf.startdate, es.data, recs, duration);
#ifdef DEBUG_EFFICIENCY
AddWavetime+= time2.elapsed();
#endif
EventDataType min = a->Min();
EventDataType max = a->Max();
@ -3173,6 +3255,15 @@ bool ResmedLoader::LoadBRP(Session *sess, const QString & path)
}
}
#ifdef DEBUG_EFFICIENCY
timeMutex.lock();
timeInLoadBRP += time.elapsed();
timeInEDFOpen += edfopentime;
timeInEDFParser += edfparsetime;
timeInAddWaveform += AddWavetime;
timeMutex.unlock();
#endif
return true;
}
@ -3307,6 +3398,7 @@ void ResmedLoader::ToTimeDelta(Session *sess, ResMedEDFParser &edf, EDFSignal &e
}
#ifdef DEBUG_EFFICIENCY
timeMutex.lock();
if (el != nullptr) {
qint64 t = time.nsecsElapsed();
int cnt = el->count();
@ -3322,15 +3414,29 @@ void ResmedLoader::ToTimeDelta(Session *sess, ResMedEDFParser &edf, EDFSignal &e
channel_time[code] += t;
}
}
timeInTimeDelta += time.elapsed();
timeMutex.unlock();
#endif
}
// Load SAD Oximetry Signals
bool ResmedLoader::LoadSAD(Session *sess, const QString & path)
{
#ifdef DEBUG_EFFICIENCY
QTime time;
time.start();
#endif
ResMedEDFParser edf(path);
#ifdef DEBUG_EFFICIENCY
int edfopentime = time.elapsed();
time.start();
#endif
if (!edf.Parse())
return false;
#ifdef DEBUG_EFFICIENCY
int edfparsetime = time.elapsed();
time.start();
#endif
sess->updateFirst(edf.startdate);
qint64 duration = edf.GetNumDataRecords() * edf.GetDuration();
@ -3369,15 +3475,34 @@ bool ResmedLoader::LoadSAD(Session *sess, const QString & path)
}
}
#ifdef DEBUG_EFFICIENCY
timeMutex.lock();
timeInLoadSAD += time.elapsed();
timeInEDFOpen += edfopentime;
timeInEDFParser += edfparsetime;
timeMutex.unlock();
#endif
return true;
}
bool ResmedLoader::LoadPLD(Session *sess, const QString & path)
{
#ifdef DEBUG_EFFICIENCY
QTime time;
time.start();
#endif
ResMedEDFParser edf(path);
#ifdef DEBUG_EFFICIENCY
int edfopentime = time.elapsed();
time.start();
#endif
if (!edf.Parse())
return false;
#ifdef DEBUG_EFFICIENCY
int edfparsetime = time.elapsed();
time.start();
#endif
// Is it save to assume the order does not change here?
enum PLDType { MaskPres = 0, TherapyPres, ExpPress, Leak, RR, Vt, Mv, SnoreIndex, FFLIndex, U1, U2 };
@ -3510,6 +3635,13 @@ bool ResmedLoader::LoadPLD(Session *sess, const QString & path)
}
}
#ifdef DEBUG_EFFICIENCY
timeMutex.lock();
timeInLoadPLD += time.elapsed();
timeInEDFOpen += edfopentime;
timeInEDFParser += edfparsetime;
timeMutex.unlock();
#endif
return true;
}

12
sleepyhead/SleepLib/loader_plugins/resmed_loader.h
View File

@ -460,6 +460,18 @@ protected:
#ifdef DEBUG_EFFICIENCY
QHash<ChannelID, qint64> channel_efficiency;
QHash<ChannelID, qint64> channel_time;
volatile qint64 timeInLoadBRP;
volatile qint64 timeInLoadPLD;
volatile qint64 timeInLoadEVE;
volatile qint64 timeInLoadCSL;
volatile qint64 timeInLoadSAD;
volatile qint64 timeInEDFOpen;
volatile qint64 timeInEDFParser;
volatile qint64 timeInAddWaveform;
volatile qint64 timeInTimeDelta;
QMutex timeMutex;
#endif
};

11
sleepyhead/SleepLib/session.cpp
View File

@ -23,7 +23,7 @@ using namespace std;
// This is the uber important database version for SleepyHeads internal storage
// Increment this after stuffing with Session's save & load code.
const quint16 summary_version = 17;
const quint16 summary_version = 18;
const quint16 events_version = 10;
Session::Session(Machine *m, SessionID session)
@ -46,7 +46,7 @@ Session::Session(Machine *m, SessionID session)
s_first = s_last = 0;
s_evchecksum_checked = false;
s_summaryOnly = false;
s_noSettings = s_summaryOnly = false;
destroyed = false;
}
@ -361,6 +361,8 @@ bool Session::StoreSummary()
out << s_summaryOnly;
// 13 ->
out << s_noSettings; // 18
out << m_slices;
file.close();
@ -609,6 +611,11 @@ bool Session::LoadSummary()
} else if (version > 13) {
in >> s_summaryOnly;
}
if (version >= 18) {
in >> s_noSettings;
} else {
s_noSettings = (settings.size() == 0);
}
if (version == 16) {
QList<SessionSlice> slices;

13
sleepyhead/SleepLib/session.h
View File

@ -1,4 +1,4 @@
/* SleepLib Session Header
/* SleepLib Session Header
*
* This stuff contains the session calculation smarts
*
@ -386,13 +386,11 @@ class Session
Machine *machine() { return s_machine; }
//! \brief Returns true if session only contains summary data
inline bool summaryOnly() {
return s_summaryOnly;
}
inline bool summaryOnly() { return s_summaryOnly; }
inline bool noSettings() { return s_noSettings; }
inline void setSummaryOnly(bool b) {
s_summaryOnly = b;
}
inline void setSummaryOnly(bool b) { s_summaryOnly = b; }
inline void setNoSettings(bool b) { s_noSettings = b; }
void setOpened(bool b = true) {
s_events_loaded = b;
@ -432,6 +430,7 @@ protected:
bool s_evchecksum_checked;
bool _first_session;
bool s_summaryOnly;
bool s_noSettings;
bool s_summary_loaded;
bool s_events_loaded;

10
sleepyhead/daily.cpp
View File

@ -987,7 +987,9 @@ QString Daily::getMachineSettings(Day * day) {
html+=QString("<tr><td colspan=5 align=center><b>%1</b></td></tr>").arg(tr("Machine Settings"));
html+="<tr><td colspan=5>&nbsp;</td></tr>";
if ((day->settingExists(CPAP_BrokenSummary))) {
if (day->noSettings(cpap)) {
html+="<tr><td colspan=5 align=center><i>"+tr("<b>Please Note:</b> All settings shown below are based on assumptions that nothing's changed since previous days.")+"</i></td></tr>\n";
} else if ((day->settingExists(CPAP_BrokenSummary))) {
html+="<tr><td colspan=5 align=center><i>"+tr("Machine Settings Unavailable")+"</i></td></tr></table><hr/>\n";
return html;
}
@ -1147,9 +1149,9 @@ QString Daily::getCPAPInformation(Day * day)
html+=tr("PAP Mode: %1<br/>").arg(day->getCPAPMode());
html+= day->getPressureSettings();
html+="</td></tr>\n";
if ((day->settingExists(CPAP_BrokenSummary))) {
html+="<tr><td>&nbsp;</td></tr>\n";
html+=QString("<tr><td colspan=2><i>%1</i></td></tr>").arg("<b>"+STR_MessageBox_PleaseNote+":</b> "+ tr("This day has missing pressure, mode and settings data."));
if (day->noSettings(cpap)) { // (day->settingExists(CPAP_BrokenSummary))) {
//html+="<tr><td>&nbsp;</td></tr>\n";
html+=QString("<tr><td colspan=2 align=center><i>%1</i></td></tr>").arg(tr("(Mode/Pressure settings are guessed on this day.)"));
}
html+="</table>\n";