Change options to make report more complete

Doxyfile

@@ -44,7 +44,7 @@ PROJECT_NAME           = OSCAR
 # This could be handy for archiving the generated documentation or
 # if some version control system is used.
 
-PROJECT_NUMBER         = 1.0.x
+PROJECT_NUMBER         = 1.1.x
 
 # Using the PROJECT_BRIEF tag one can provide an optional one line description
 # for a project that appears at the top of each page and should give viewer
@@ -74,7 +74,7 @@ OUTPUT_DIRECTORY       = ./doxydoc
 # source files, where putting all generated files in the same directory would
 # otherwise cause performance problems for the file system.
 
-CREATE_SUBDIRS         = NO
+CREATE_SUBDIRS         = YES
 
 # The OUTPUT_LANGUAGE tag is used to specify the language in which all
 # documentation generated by doxygen is written. Doxygen will use this
@@ -172,7 +172,7 @@ JAVADOC_AUTOBRIEF      = NO
 # will behave just like regular Qt-style comments (thus requiring
 # an explicit \brief command for a brief description.)
 
-QT_AUTOBRIEF           = NO
+QT_AUTOBRIEF           = YES
 
 # The MULTILINE_CPP_IS_BRIEF tag can be set to YES to make Doxygen
 # treat a multi-line C++ special comment block (i.e. a block of //! or ///
@@ -332,7 +332,7 @@ SYMBOL_CACHE_SIZE      = 0
 # Private class members and static file members will be hidden unless
 # the EXTRACT_PRIVATE and EXTRACT_STATIC tags are set to YES
 
-EXTRACT_ALL            = NO
+EXTRACT_ALL            = YES
 
 # If the EXTRACT_PRIVATE tag is set to YES all private members of a class
 # will be included in the documentation.
@@ -342,7 +342,7 @@ EXTRACT_PRIVATE        = NO
 # If the EXTRACT_STATIC tag is set to YES all static members of a file
 # will be included in the documentation.
 
-EXTRACT_STATIC         = NO
+EXTRACT_STATIC         = YES
 
 # If the EXTRACT_LOCAL_CLASSES tag is set to YES classes (and structs)
 # defined locally in source files will be included in the documentation.
@@ -444,7 +444,7 @@ SORT_MEMBER_DOCS       = YES
 # by member name. If set to NO (the default) the members will appear in
 # declaration order.
 
-SORT_BRIEF_DOCS        = NO
+SORT_BRIEF_DOCS        = YES
 
 # If the SORT_MEMBERS_CTORS_1ST tag is set to YES then doxygen
 # will sort the (brief and detailed) documentation of class members so that
@@ -962,7 +962,7 @@ DOCSET_PUBLISHER_ID    = org.doxygen.Publisher
 
 # The GENERATE_PUBLISHER_NAME tag identifies the documentation publisher.
 
-DOCSET_PUBLISHER_NAME  = Publisher
+DOCSET_PUBLISHER_NAME  = The OSCAR Team
 
 # If the GENERATE_HTMLHELP tag is set to YES, additional index files
 # will be generated that can be used as input for tools like the
@@ -1099,12 +1099,12 @@ ENUM_VALUES_PER_LINE   = 4
 # JavaScript, DHTML, CSS and frames is required (i.e. any modern browser).
 # Windows users are probably better off using the HTML help feature.
 
-GENERATE_TREEVIEW      = NO
+GENERATE_TREEVIEW      = YES
 
 # By enabling USE_INLINE_TREES, doxygen will generate the Groups, Directories,
 # and Class Hierarchy pages using a tree view instead of an ordered list.
 
-USE_INLINE_TREES       = NO
+USE_INLINE_TREES       = YES
 
 # If the treeview is enabled (see GENERATE_TREEVIEW) then this tag can be
 # used to set the initial width (in pixels) of the frame in which the tree
@@ -1180,7 +1180,7 @@ SERVER_BASED_SEARCH    = NO
 # If the GENERATE_LATEX tag is set to YES (the default) Doxygen will
 # generate Latex output.
 
-GENERATE_LATEX         = YES
+GENERATE_LATEX         = NO
 
 # The LATEX_OUTPUT tag is used to specify where the LaTeX docs will be put.
 # If a relative path is entered the value of OUTPUT_DIRECTORY will be