mirror of
https://gitlab.com/pholy/OSCAR-code.git
synced 2025-04-05 10:40:42 +00:00
Split resmedEDFinfo class into new files
This commit is contained in:
Phil Olynyk
parent
433c60f195
commit
eeed7c29bc
93
oscar/SleepLib/loader_plugins/resmed_EDFinfo.cpp
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93
oscar/SleepLib/loader_plugins/resmed_EDFinfo.cpp
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@ -0,0 +1,93 @@
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/* SleepLib ResMed Loader Implementation
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*
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* Copyright (c) 2019 The OSCAR Team
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* Copyright (c) 2011-2018 Mark Watkins <mark@jedimark.net>
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*
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* This file is subject to the terms and conditions of the GNU General Public
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* License. See the file COPYING in the main directory of the source code
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* for more details. */
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#include <QApplication>
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#include <QString>
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#include <QDateTime>
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#include <QDir>
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#include <QFile>
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#include <QMessageBox>
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#include <QTextStream>
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#include <QDebug>
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#include <QStringList>
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#include <cmath>
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#include "SleepLib/session.h"
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#include "SleepLib/calcs.h"
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// #include "SleepLib/loader_plugins/resmed_loader.h"
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#include "SleepLib/loader_plugins/resmed_EDFinfo.h"
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ResMedEDFInfo::ResMedEDFInfo() :EDFInfo() { }
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ResMedEDFInfo::~ResMedEDFInfo() { }
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bool ResMedEDFInfo::Parse(QByteArray * fileData ) // overrides and calls the super's Parse
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{
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EDFInfo::Parse( fileData );
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// Now massage some stuff into OSCAR's layout
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int snp = edfHdr.recordingident.indexOf("SRN=");
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serialnumber.clear();
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for (int i = snp + 4; i < edfHdr.recordingident.length(); i++) {
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if (edfHdr.recordingident[i] == ' ') {
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break;
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}
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serialnumber += edfHdr.recordingident[i];
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}
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if (!edfHdr.startdate_orig.isValid()) {
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qDebug() << "Invalid date time retreieved parsing EDF File " << filename;
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sleep(1);
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return false;
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}
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startdate = qint64(edfHdr.startdate_orig.toTime_t()) * 1000LL;
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//startdate-=timezoneOffset();
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if (startdate == 0) {
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qDebug() << "Invalid startdate = 0 in EDF File " << filename;
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sleep(1);
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return false;
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}
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dur_data_record = (edfHdr.duration_Seconds * 1000.0L);
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enddate = startdate + dur_data_record * qint64(edfHdr.num_data_records);
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return true;
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}
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extern QHash<ChannelID, QStringList> resmed_codes;
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// Looks up foreign language Signal names that match this channelID
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EDFSignal *ResMedEDFInfo::lookupSignal(ChannelID ch)
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{
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// Get list of all known foreign language names for this channel
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auto channames = resmed_codes.find(ch);
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if (channames == resmed_codes.end()) {
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// no alternatives strings found for this channel
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return nullptr;
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}
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// This is bad, because ResMed thinks it was a cool idea to use two channels with the same name.
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// Scan through EDF's list of signals to see if any match
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for (auto & name : channames.value()) {
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EDFSignal *sig = lookupLabel(name);
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if (sig)
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return sig;
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}
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// Failed
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return nullptr;
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}
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243
oscar/SleepLib/loader_plugins/resmed_EDFinfo.h
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243
oscar/SleepLib/loader_plugins/resmed_EDFinfo.h
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@ -0,0 +1,243 @@
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/* SleepLib RESMED EDFinfo Header
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*
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* Copyright (C) 2011-2018 Mark Watkins <mark@jedimark.net>
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*
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* This file is subject to the terms and conditions of the GNU General Public
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* License. See the file COPYING in the main directory of the source code
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* for more details. */
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#ifndef RESMED_EDFINFO_H
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#define RESMED_EDFINFO_H
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#include <QVector>
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#include "SleepLib/machine.h" // Base class: MachineLoader
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#include "SleepLib/machine_loader.h"
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#include "SleepLib/profiles.h"
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#include "SleepLib/loader_plugins/edfparser.h"
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enum EDFType { EDF_UNKNOWN, EDF_BRP, EDF_PLD, EDF_SAD, EDF_EVE, EDF_CSL };
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EDFType lookupEDFType(const QString & text);
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const QString resmed_class_name = STR_MACH_ResMed;
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class STRFile; // forward
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class ResMedEDFInfo : public EDFInfo
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{
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public:
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ResMedEDFInfo();
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~ResMedEDFInfo();
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virtual bool Parse(QByteArray * fileData) override; // overrides and calls the super's Parse
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virtual qint64 GetDurationMillis() { return dur_data_record; } // overrides the super
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EDFSignal *lookupSignal(ChannelID ch);
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//! \brief The following are computed from the edfHdr data
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QString serialnumber;
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qint64 dur_data_record;
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qint64 startdate;
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qint64 enddate;
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};
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class EDFduration
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{
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public:
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EDFduration() { start = end = 0; type = EDF_UNKNOWN; }
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EDFduration(quint32 start, quint32 end, QString path) :
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start(start), end(end), path(path) {}
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quint32 start;
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quint32 end;
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QString path;
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QString filename;
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EDFType type;
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};
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class STRRecord
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{
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public:
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STRRecord() {
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maskon.clear();
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maskoff.clear();
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maskdur = 0;
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maskevents = -1;
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mode = -1;
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rms9_mode = -1;
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set_pressure = -1;
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epap = -1;
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max_pressure = -1;
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min_pressure = -1;
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max_epap = -1;
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min_epap = -1;
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max_ps = -1;
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min_ps = -1;
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ps = -1;
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ipap = -1;
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max_ipap = -1;
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min_ipap = -1;
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epr = -1;
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epr_level = -1;
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sessionid = 0;
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ahi = -1;
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oai = -1;
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ai = -1;
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hi = -1;
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uai = -1;
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cai = -1;
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csr = -1;
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leak50 = -1;
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leak95 = -1;
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leakmax = -1;
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rr50 = -1;
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rr95 = -1;
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rrmax = -1;
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mv50 = -1;
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mv95 = -1;
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mvmax = -1;
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ie50 = -1;
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ie95 = -1;
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iemax = -1;
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tv50 = -1;
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tv95 = -1;
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tvmax = -1;
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mp50 = -1;
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mp95 = -1;
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mpmax = -1;
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tgtepap50 = -1;
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tgtepap95 = -1;
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tgtepapmax = -1;
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tgtipap50 = -1;
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tgtipap95 = -1;
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tgtipapmax = -1;
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s_RampTime = -1;
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s_RampEnable = -1;
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s_EPR_ClinEnable = -1;
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s_EPREnable = -1;
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s_PtAccess = -1;
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s_ABFilter = -1;
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s_Mask = -1;
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s_Tube = -1;
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s_ClimateControl = -1;
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s_HumEnable = -1;
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s_HumLevel = -1;
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s_TempEnable = -1;
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s_Temp = -1;
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s_SmartStart = -1;
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ramp_pressure = -1;
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date=QDate();
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}
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STRRecord(const STRRecord & copy) = default;
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// All the data members
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QVector<quint32> maskon;
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QVector<quint32> maskoff;
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EventDataType maskdur;
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EventDataType maskevents;
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EventDataType mode;
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EventDataType rms9_mode;
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EventDataType set_pressure;
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EventDataType max_pressure;
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EventDataType min_pressure;
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EventDataType epap;
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EventDataType max_ps;
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EventDataType min_ps;
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EventDataType ps;
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EventDataType max_epap;
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EventDataType min_epap;
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EventDataType ipap;
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EventDataType max_ipap;
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EventDataType min_ipap;
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EventDataType epr;
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EventDataType epr_level;
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quint32 sessionid;
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EventDataType ahi;
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EventDataType oai;
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EventDataType ai;
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EventDataType hi;
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EventDataType uai;
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EventDataType cai;
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EventDataType csr;
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EventDataType leak50;
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EventDataType leak95;
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EventDataType leakmax;
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EventDataType rr50;
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EventDataType rr95;
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EventDataType rrmax;
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EventDataType mv50;
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EventDataType mv95;
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EventDataType mvmax;
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EventDataType tv50;
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EventDataType tv95;
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EventDataType tvmax;
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EventDataType mp50;
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EventDataType mp95;
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EventDataType mpmax;
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EventDataType ie50;
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EventDataType ie95;
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EventDataType iemax;
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EventDataType tgtepap50;
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EventDataType tgtepap95;
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EventDataType tgtepapmax;
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EventDataType tgtipap50;
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EventDataType tgtipap95;
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EventDataType tgtipapmax;
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EventDataType ramp_pressure;
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QDate date;
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EventDataType s_RampTime;
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int s_RampEnable;
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int s_EPR_ClinEnable;
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int s_EPREnable;
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int s_PtAccess;
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int s_ABFilter;
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int s_Mask;
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int s_Tube;
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int s_ClimateControl;
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int s_HumEnable;
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EventDataType s_HumLevel;
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int s_TempEnable;
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EventDataType s_Temp;
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int s_SmartStart;
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};
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class STRFile
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{
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public:
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STRFile() :
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filename(QString()), edf(nullptr) {}
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STRFile(QString name, ResMedEDFInfo *str) :
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filename(name), edf(str) {}
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STRFile(const STRFile & copy) = default;
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virtual ~STRFile() {}
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QString filename;
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ResMedEDFInfo * edf;
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};
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#endif // RESMED_EDFINFO_H
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@ -18,11 +18,12 @@
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#include <QStringList>
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#include <cmath>
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#include "resmed_loader.h"
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#include "SleepLib/session.h"
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#include "SleepLib/calcs.h"
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#include "SleepLib/loader_plugins/resmed_loader.h"
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#include "SleepLib/loader_plugins/resmed_EDFinfo.h"
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#ifdef DEBUG_EFFICIENCY
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#include <QElapsedTimer> // only available in 4.8
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#endif
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@ -58,70 +59,6 @@ QHash<ChannelID, QStringList> resmed_codes;
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const QString STR_ext_TGT = "tgt";
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const QString STR_ext_CRC = "crc";
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ResMedEDFInfo::ResMedEDFInfo() :EDFInfo() { }
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ResMedEDFInfo::~ResMedEDFInfo() { }
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bool ResMedEDFInfo::Parse(QByteArray * fileData ) // overrides and calls the super's Parse
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{
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EDFInfo::Parse( fileData );
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// Now massage some stuff into OSCAR's layout
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int snp = edfHdr.recordingident.indexOf("SRN=");
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serialnumber.clear();
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for (int i = snp + 4; i < edfHdr.recordingident.length(); i++) {
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if (edfHdr.recordingident[i] == ' ') {
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break;
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}
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serialnumber += edfHdr.recordingident[i];
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}
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if (!edfHdr.startdate_orig.isValid()) {
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qDebug() << "Invalid date time retreieved parsing EDF File " << filename;
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sleep(1);
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return false;
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}
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startdate = qint64(edfHdr.startdate_orig.toTime_t()) * 1000LL;
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//startdate-=timezoneOffset();
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if (startdate == 0) {
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qDebug() << "Invalid startdate = 0 in EDF File " << filename;
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sleep(1);
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return false;
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}
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dur_data_record = (edfHdr.duration_Seconds * 1000.0L);
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enddate = startdate + dur_data_record * qint64(edfHdr.num_data_records);
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return true;
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}
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// Looks up foreign language Signal names that match this channelID
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EDFSignal *ResMedEDFInfo::lookupSignal(ChannelID ch)
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{
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// Get list of all known foreign language names for this channel
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auto channames = resmed_codes.find(ch);
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if (channames == resmed_codes.end()) {
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// no alternatives strings found for this channel
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return nullptr;
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}
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// This is bad, because ResMed thinks it was a cool idea to use two channels with the same name.
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// Scan through EDF's list of signals to see if any match
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for (auto & name : channames.value()) {
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EDFSignal *sig = lookupLabel(name);
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if (sig)
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return sig;
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}
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// Failed
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return nullptr;
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}
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// Check if given string matches any alternative signal names for this channel
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bool matchSignal(ChannelID ch, const QString & name)
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{
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@ -604,6 +541,7 @@ void ResmedLoader::ParseSTR(Machine *mach, QMap<QDate, STRFile> & STRmap, QDate
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// sleep(3);
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}
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ResmedLoader::ResmedLoader() {
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#ifndef UNITTEST_MODE
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const QString RMS9_ICON = ":/icons/rms9.png";
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@ -14,225 +14,17 @@
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#include "SleepLib/machine_loader.h"
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#include "SleepLib/profiles.h"
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#include "SleepLib/loader_plugins/edfparser.h"
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#include "SleepLib/loader_plugins/resmed_EDFinfo.h"
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//********************************************************************************************
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/// IMPORTANT!!!
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//********************************************************************************************
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// Please INCREMENT the following value when making changes to this loaders implementation.
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//
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const int resmed_data_version = 11;
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const int resmed_data_version = 12;
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//
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//********************************************************************************************
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enum EDFType { EDF_UNKNOWN, EDF_BRP, EDF_PLD, EDF_SAD, EDF_EVE, EDF_CSL };
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EDFType lookupEDFType(const QString & text);
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const QString resmed_class_name = STR_MACH_ResMed;
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class ResMedEDFInfo : public EDFInfo
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{
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public:
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ResMedEDFInfo();
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~ResMedEDFInfo();
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virtual bool Parse(QByteArray * fileData) override; // overrides and calls the super's Parse
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virtual qint64 GetDurationMillis() { return dur_data_record; } // overrides the super
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EDFSignal *lookupSignal(ChannelID ch);
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//! \brief The following are computed from the edfHdr data
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QString serialnumber;
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qint64 dur_data_record;
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qint64 startdate;
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qint64 enddate;
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};
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class EDFduration
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{
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public:
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EDFduration() { start = end = 0; type = EDF_UNKNOWN; }
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EDFduration(quint32 start, quint32 end, QString path) :
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start(start), end(end), path(path) {}
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quint32 start;
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quint32 end;
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QString path;
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QString filename;
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EDFType type;
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};
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class STRRecord
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{
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public:
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STRRecord() {
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maskon.clear();
|
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maskoff.clear();
|
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maskdur = 0;
|
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maskevents = -1;
|
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mode = -1;
|
||||
rms9_mode = -1;
|
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set_pressure = -1;
|
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epap = -1;
|
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max_pressure = -1;
|
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min_pressure = -1;
|
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max_epap = -1;
|
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min_epap = -1;
|
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max_ps = -1;
|
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min_ps = -1;
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ps = -1;
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ipap = -1;
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max_ipap = -1;
|
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min_ipap = -1;
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epr = -1;
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epr_level = -1;
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sessionid = 0;
|
||||
|
||||
ahi = -1;
|
||||
oai = -1;
|
||||
ai = -1;
|
||||
hi = -1;
|
||||
uai = -1;
|
||||
cai = -1;
|
||||
csr = -1;
|
||||
|
||||
leak50 = -1;
|
||||
leak95 = -1;
|
||||
leakmax = -1;
|
||||
|
||||
rr50 = -1;
|
||||
rr95 = -1;
|
||||
rrmax = -1;
|
||||
|
||||
mv50 = -1;
|
||||
mv95 = -1;
|
||||
mvmax = -1;
|
||||
|
||||
ie50 = -1;
|
||||
ie95 = -1;
|
||||
iemax = -1;
|
||||
|
||||
tv50 = -1;
|
||||
tv95 = -1;
|
||||
tvmax = -1;
|
||||
|
||||
mp50 = -1;
|
||||
mp95 = -1;
|
||||
mpmax = -1;
|
||||
|
||||
tgtepap50 = -1;
|
||||
tgtepap95 = -1;
|
||||
tgtepapmax = -1;
|
||||
|
||||
tgtipap50 = -1;
|
||||
tgtipap95 = -1;
|
||||
tgtipapmax = -1;
|
||||
|
||||
s_RampTime = -1;
|
||||
s_RampEnable = -1;
|
||||
s_EPR_ClinEnable = -1;
|
||||
s_EPREnable = -1;
|
||||
|
||||
s_PtAccess = -1;
|
||||
s_ABFilter = -1;
|
||||
s_Mask = -1;
|
||||
s_Tube = -1;
|
||||
s_ClimateControl = -1;
|
||||
s_HumEnable = -1;
|
||||
s_HumLevel = -1;
|
||||
s_TempEnable = -1;
|
||||
s_Temp = -1;
|
||||
s_SmartStart = -1;
|
||||
|
||||
ramp_pressure = -1;
|
||||
|
||||
date=QDate();
|
||||
}
|
||||
|
||||
STRRecord(const STRRecord & copy) = default;
|
||||
|
||||
// All the data members
|
||||
|
||||
QVector<quint32> maskon;
|
||||
QVector<quint32> maskoff;
|
||||
|
||||
EventDataType maskdur;
|
||||
EventDataType maskevents;
|
||||
EventDataType mode;
|
||||
EventDataType rms9_mode;
|
||||
EventDataType set_pressure;
|
||||
EventDataType max_pressure;
|
||||
EventDataType min_pressure;
|
||||
EventDataType epap;
|
||||
EventDataType max_ps;
|
||||
EventDataType min_ps;
|
||||
EventDataType ps;
|
||||
EventDataType max_epap;
|
||||
EventDataType min_epap;
|
||||
EventDataType ipap;
|
||||
EventDataType max_ipap;
|
||||
EventDataType min_ipap;
|
||||
EventDataType epr;
|
||||
EventDataType epr_level;
|
||||
quint32 sessionid;
|
||||
EventDataType ahi;
|
||||
EventDataType oai;
|
||||
EventDataType ai;
|
||||
EventDataType hi;
|
||||
EventDataType uai;
|
||||
EventDataType cai;
|
||||
EventDataType csr;
|
||||
EventDataType leak50;
|
||||
EventDataType leak95;
|
||||
EventDataType leakmax;
|
||||
EventDataType rr50;
|
||||
EventDataType rr95;
|
||||
EventDataType rrmax;
|
||||
EventDataType mv50;
|
||||
EventDataType mv95;
|
||||
EventDataType mvmax;
|
||||
EventDataType tv50;
|
||||
EventDataType tv95;
|
||||
EventDataType tvmax;
|
||||
EventDataType mp50;
|
||||
EventDataType mp95;
|
||||
EventDataType mpmax;
|
||||
EventDataType ie50;
|
||||
EventDataType ie95;
|
||||
EventDataType iemax;
|
||||
EventDataType tgtepap50;
|
||||
EventDataType tgtepap95;
|
||||
EventDataType tgtepapmax;
|
||||
EventDataType tgtipap50;
|
||||
EventDataType tgtipap95;
|
||||
EventDataType tgtipapmax;
|
||||
|
||||
EventDataType ramp_pressure;
|
||||
QDate date;
|
||||
|
||||
EventDataType s_RampTime;
|
||||
int s_RampEnable;
|
||||
int s_EPR_ClinEnable;
|
||||
int s_EPREnable;
|
||||
|
||||
int s_PtAccess;
|
||||
int s_ABFilter;
|
||||
int s_Mask;
|
||||
int s_Tube;
|
||||
int s_ClimateControl;
|
||||
int s_HumEnable;
|
||||
EventDataType s_HumLevel;
|
||||
int s_TempEnable;
|
||||
EventDataType s_Temp;
|
||||
int s_SmartStart;
|
||||
|
||||
};
|
||||
|
||||
|
||||
class ResmedLoader;
|
||||
|
||||
@ -260,23 +52,6 @@ protected:
|
||||
ResMedDay * resday;
|
||||
};
|
||||
|
||||
class STRFile
|
||||
{
|
||||
public:
|
||||
STRFile() :
|
||||
filename(QString()), edf(nullptr) {}
|
||||
STRFile(QString name, ResMedEDFInfo *str) :
|
||||
filename(name), edf(str) {}
|
||||
STRFile(const STRFile & copy) = default;
|
||||
|
||||
virtual ~STRFile() {}
|
||||
|
||||
QString filename;
|
||||
ResMedEDFInfo * edf;
|
||||
};
|
||||
|
||||
|
||||
|
||||
/*! \class ResmedLoader
|
||||
\brief Importer for ResMed S9 Data
|
||||
*/
|
||||
|
||||
@ -286,6 +286,7 @@ SOURCES += \
|
||||
SleepLib/loader_plugins/mseries_loader.cpp \
|
||||
SleepLib/loader_plugins/prs1_loader.cpp \
|
||||
SleepLib/loader_plugins/resmed_loader.cpp \
|
||||
SleepLib/loader_plugins/resmed_EDFinfo.cpp \
|
||||
SleepLib/loader_plugins/somnopose_loader.cpp \
|
||||
SleepLib/loader_plugins/zeo_loader.cpp \
|
||||
translation.cpp \
|
||||
@ -356,6 +357,7 @@ HEADERS += \
|
||||
SleepLib/loader_plugins/mseries_loader.h \
|
||||
SleepLib/loader_plugins/prs1_loader.h \
|
||||
SleepLib/loader_plugins/resmed_loader.h \
|
||||
SleepLib/loader_plugins/resmed_EDFinfo.h \
|
||||
SleepLib/loader_plugins/somnopose_loader.h \
|
||||
SleepLib/loader_plugins/zeo_loader.h \
|
||||
translation.h \
|
||||
|
||||
Loading…
Reference in New Issue
Block a user