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Merge branch 'master' into translations

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This commit is contained in:
ArieKlerk 2020-05-06 20:46:40 +02:00
commit f29602a02e
31 changed files with 759 additions and 424 deletions
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0
Building/Linux/OSCAR.desktop Executable file → Normal file
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9
Building/Linux/README.first
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@ -4,8 +4,10 @@ you have already compiled and linked OSCAR using qmake and make, or QtCreator.
The packages, once built, can be installed using 'dpkg i' or 'gdebi' - with either su or sudo. If you use
sudo, you will get a desktop icon installed, which must be double-clicked and trusted to see the actual icon.
The packaged file cannot be installed using apt, apt-get, or aptitude, because those programs
install from the distribution repository, but not a plan package file.
The packaged file cannot be installed using apt-get, or aptitude, because those programs
install from the distribution repository, but not a plain package file.
The package can be installed with apt or apt -F if the file name is preceded by ./ to force filename recognition.
The packaging scripts assume the following folder structure:
@ -22,6 +24,9 @@ The code to put a desktop icon in the Desktop folder, regardless of language, wa
Getting a menu item istalled is largely due to the efforts of CrimsonNape.
The mkDebian9.sh and mkUbuntu.sh scripts have been consolidated into mkDistDeb.sh and are now depreciated and will be removed. mkDistDeb.sh
has code to query which packages are available for certail libraries.
Finally, the mkRedHat.sh script has not been tested.

50
Building/Linux/ln_usrbin-test.sh
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@ -10,32 +10,32 @@ appli_name="OSCAR-test"
# binary copy flag
copy_flag=0
# Select the binary file for the goog version of QT (5.7 ou 5.9)
#echo "test the version of qt5 core version"
#### Select the binary file for the goog version of QT (5.7 ou 5.9)
####echo "test the version of qt5 core version"
###
###if [ -f "/etc/redhat-release" ]; then
### # pour mageia (red hat)
### echo "distribution : mageia (red hat)"
### Qt5_core=$(yum search -q qt5core5 | awk '{print $1}' | grep lib | sort -u)
### MajorVer_no=$(yum info $Qt5_core | grep -i "version" | awk '{print $3}' | awk -F. '{print $1}')
### MinorVer_no=$(yum info $Qt5_core | grep -i "version" | awk '{print $3}' | awk -F. '{print $2}')
###
###elif [ -f "/etc/lsb-release" ] || [ -f "/etc/debian_version" ]; then
### # pour debian
#### echo "distribution : debian"
### Qt5_core=$(dpkg -l | awk '{print $2}'| grep qt5 | grep core | awk -F: '{print $1}')
### Major_ver=$(dpkg -l | grep $Qt5_core | awk '{print $3}' | awk -F. '{print $1}')
### Minor_ver=$(dpkg -l | grep $Qt5_core | awk '{print $3}' | awk -F. '{print $2}')
###else
### echo "unknown distribution "
### exit
###fi
###
####echo "Qt5_core = '$Qt5_core'"
####echo "Major_ver = $Major_ver"
####echo "Minor_ver = $Minor_ver"
if [ -f "/etc/redhat-release" ]; then
# pour mageia (red hat)
echo "distribution : mageia (red hat)"
Qt5_core=$(yum search -q qt5core5 | awk '{print $1}' | grep lib | sort -u)
MajorVer_no=$(yum info $Qt5_core | grep -i "version" | awk '{print $3}' | awk -F. '{print $1}')
MinorVer_no=$(yum info $Qt5_core | grep -i "version" | awk '{print $3}' | awk -F. '{print $2}')
elif [ -f "/etc/lsb-release" ] || [ -f "/etc/debian_version" ]; then
# pour debian
# echo "distribution : debian"
Qt5_core=$(dpkg -l | awk '{print $2}'| grep qt5 | grep core | awk -F: '{print $1}')
Major_ver=$(dpkg -l | grep $Qt5_core | awk '{print $3}' | awk -F. '{print $1}')
Minor_ver=$(dpkg -l | grep $Qt5_core | awk '{print $3}' | awk -F. '{print $2}')
else
echo "unknown distribution "
exit
fi
#echo "Qt5_core = '$Qt5_core'"
#echo "Major_ver = $Major_ver"
#echo "Minor_ver = $Minor_ver"
if [ -x /usr/bin/update-menus ]; then update-menus; fi
##if [ -x /usr/bin/update-menus ]; then update-menus; fi
if [ ! -z "$SUDO_USER" ]; then
# find real name of the Desktop folder (Bureau for xubuntu french version)

52
Building/Linux/ln_usrbin.sh
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@ -10,38 +10,38 @@ appli_name="OSCAR"
# binary copy flag
copy_flag=0
# Select the binary file for the goog version of QT (5.7 ou 5.9)
echo "test the version of qt5 core version"
#### Select the binary file for the goog version of QT (5.7 ou 5.9)
###echo "test the version of qt5 core version"
###
###if [ -f "/etc/redhat-release" ]; then
### # pour mageia (red hat)
### echo "distribution : mageia (red hat)"
### nom_core=$(yum search -q qt5core5 | awk '{print $1}' | grep lib | sort -u)
### no_vermaj=$(yum info $nom_core | grep -i "version" | awk '{print $3}' | awk -F. '{print $1}')
### no_vermin=$(yum info $nom_core | grep -i "version" | awk '{print $3}' | awk -F. '{print $2}')
###
###elif [ -f "/etc/lsb-release" ] || [ -f "/etc/debian_version" ]; then
### # pour debian
### echo "distribution : debian"
### nom_core=$(dpkg -l | awk '{print $2}'| grep qt5 | grep core | awk -F: '{print $1}')
### no_vermaj=$(dpkg -l | grep $nom_core | awk '{print $3}' | awk -F. '{print $1}')
### no_vermin=$(dpkg -l | grep $nom_core | awk '{print $3}' | awk -F. '{print $2}')
###else
### echo "unknown distribution "
### exit
###fi
###
###echo "QT5_core = '$nom_core'"
###echo "Major ver = $no_vermaj"
###echo "Minor ver = $no_vermin"
if [ -f "/etc/redhat-release" ]; then
# pour mageia (red hat)
echo "distribution : mageia (red hat)"
nom_core=$(yum search -q qt5core5 | awk '{print $1}' | grep lib | sort -u)
no_vermaj=$(yum info $nom_core | grep -i "version" | awk '{print $3}' | awk -F. '{print $1}')
no_vermin=$(yum info $nom_core | grep -i "version" | awk '{print $3}' | awk -F. '{print $2}')
elif [ -f "/etc/lsb-release" ] || [ -f "/etc/debian_version" ]; then
# pour debian
echo "distribution : debian"
nom_core=$(dpkg -l | awk '{print $2}'| grep qt5 | grep core | awk -F: '{print $1}')
no_vermaj=$(dpkg -l | grep $nom_core | awk '{print $3}' | awk -F. '{print $1}')
no_vermin=$(dpkg -l | grep $nom_core | awk '{print $3}' | awk -F. '{print $2}')
else
echo "unknown distribution "
exit
fi
echo "QT5_core = '$nom_core'"
echo "Major ver = $no_vermaj"
echo "Minor ver = $no_vermin"
if [ -x /usr/bin/update-menus ]; then update-menus; fi
##if [ -x /usr/bin/update-menus ]; then update-menus; fi
if [ X_$SUDO_USER != "X_" ]; then
# find real name of the Desktop folder (Bureau for xubuntu french version)
desktop_folder_name="/home/$SUDO_USER/Desktop"
# si doesn't exist, try to find it translated name
# if doesn't exist, try to find it translated name
tmp_dir=""
if [ ! -d "$desktop_folder_name" ]; then
tmp_dir=`cat /home/$SUDO_USER/.config/user-dirs.dirs | grep XDG_DESKTOP_DIR | awk -F= '{print $2}' | awk -F\" '{print $2}' | awk -F\/ '{print $2}'`

8
Building/Linux/ln_usrlocalbin.sh
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@ -1,8 +0,0 @@
#! /bin/bash
#
mv /opt/tempDir /opt/OSCAR
ln -s /opt/OSCAR/OSCAR /usr/bin/OSCAR
cp /opt/OSCAR/OSCAR.desktop /home/$SUDO_USER/Desktop
chown $SUDO_USER:$SUDO_USER /home/$SUDO_USER/Desktop/OSCAR.desktop
chmod a+x /home/$SUDO_USER/Desktop/OSCAR.desktop
#

2
Building/Linux/mkDebian9.sh
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@ -30,7 +30,7 @@ pre_rem="rm_usrbin.sh"
post_rem="clean_rm.sh"
# build folder (absolute path is better)
build_folder="/home/$USER/OSCAR/build"
if [[ -n ${PRERELEASE} && ${RC} ]] ; then
if [[ -n ${PRERELEASE} && -z ${RC} ]] ; then
appli_name=${appli_name}-test
post_inst="ln_usrbin-test.sh"
pre_rem="rm_usrbin-test.sh"

179
Building/Linux/mkDistDeb.sh Executable file
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@ -0,0 +1,179 @@
#! /bin/bash
# First parameter is optional
#
function getPkg () {
unset PKGNAME
unset PKGVERS
while read stat pkg ver other ;
do
if [[ ${stat} == "ii" ]] ; then
PKGNAME=`awk -F: '{print $1}' <<< ${pkg}`
PKGVERS=`awk -F. '{print $1 "." $2}' <<< ${ver}`
break
fi ;
done <<< $(dpkg -l | grep $1)
}
ITERATION=$1
if [ -z ${ITERATION} ]; then
ITERATION="1"
fi
SRC=/home/$USER/OSCAR/OSCAR-code/oscar
VERSION=`awk '/#define VERSION / { gsub(/"/, "", $3); print $3 }' ${SRC}/VERSION`
if [[ ${VERSION} == *-* ]]; then
# Use ~ for prerelease information so that it sorts correctly compared to release
# versions. See https://www.debian.org/doc/debian-policy/ch-controlfields.html#version
IFS="-" read -r VERSION PRERELEASE <<< ${VERSION}
if [[ ${PRERELEASE} == *rc* ]]; then
RC=1
fi
VERSION="${VERSION}~${PRERELEASE}"
fi
GIT_REVISION=`awk '/#define GIT_REVISION / { gsub(/"/, "", $3); print $3 }' ${SRC}/git_info.h`
echo Version: ${VERSION}
# application name
appli_name="OSCAR"
pre_inst="tst_user.sh"
# build folder (absolute path is better)
build_folder="/home/$USER/OSCAR/build"
if [[ -n ${PRERELEASE} && -z ${RC} ]] ; then
appli_name=${appli_name}-test
post_inst="ln_usrbin-test.sh"
pre_rem="rm_usrbin-test.sh"
post_rem="clean_rm-test.sh"
else
post_inst="ln_usrbin.sh"
pre_rem="rm_usrbin.sh"
post_rem="clean_rm.sh"
fi
# temporary folder (absolute path is better)
temp_folder="/home/$USER/tmp_deb_${appli_name}/"
# destination folder in the .deb file
dest_folder="/usr/"
# the .deb file mustn't exist
archi_tmp=$(lscpu | grep -i architecture | awk -F: {'print $2'} | tr -d " ")
if [ "$archi_tmp" = "x86_64" ];then
archi="amd64"
else
archi="unknown"
fi
deb_file="${appli_name}_${VERSION}-${ITERATION}_$archi.deb"
# if deb file exists, fatal error
if [ -f "./$deb_file" ]; then
echo "destination file (./$deb_file) exists. fatal error"
exit
fi
# retrieve packages version for the dependencies
getPkg libqt5core
qtver=$PKGVERS
getPkg libdouble
dblPkg=$PKGNAME
echo "QT version " $qtver
echo "DblConv package " $dblPkg
# clean folders need to create the package
if [ -d "${temp_folder}" ]; then
rm -r ${temp_folder}
fi
mkdir ${temp_folder}
if [ ! -d "${temp_folder}" ]; then
echo "Folder (${temp_folder}) not created : fatal error."
exit
fi
chmod 0755 ${temp_folder}
# save current value of umask (for u=g and not g=o)
current_value=$(umask)
umask 022
mkdir ${temp_folder}/bin
mkdir ${temp_folder}/share
mkdir ${temp_folder}/share/${appli_name}
mkdir ${temp_folder}/share/doc
share_doc_folder="${temp_folder}/share/doc/${appli_name}"
mkdir ${share_doc_folder}
mkdir ${temp_folder}/share/icons
mkdir ${temp_folder}/share/icons/hicolor
mkdir ${temp_folder}/share/icons/hicolor/48x48
mkdir ${temp_folder}/share/icons/hicolor/48x48/apps
mkdir ${temp_folder}/share/icons/hicolor/scalable
mkdir ${temp_folder}/share/icons/hicolor/scalable/apps
mkdir ${temp_folder}/share/applications
# must delete debug symbol in OSCAR binary file
# --- V1
strip -s -o ${temp_folder}/bin/${appli_name} ${build_folder}/oscar/OSCAR
#old code : cp ${build_folder}/oscar/OSCAR ${temp_folder}/bin
# 2>/dev/null : errors does not appear : we don't care about them
cp -r ${build_folder}/oscar/Help ${temp_folder}/share/${appli_name} 2>/dev/null
cp -r ${build_folder}/oscar/Html ${temp_folder}/share/${appli_name} 2>/dev/null
cp -r ${build_folder}/oscar/Translations ${temp_folder}/share/${appli_name} 2>/dev/null
cp ./${appli_name}.png ${temp_folder}/share/icons/hicolor/48x48/apps/${appli_name}.png
cp ./${appli_name}.svg ${temp_folder}/share/icons/hicolor/scalable/apps/${appli_name}.svg
cp ./${appli_name}.desktop ${temp_folder}/share/applications/${appli_name}.desktop
echo "Copyright 2019-2020 oscar-team.org <oscar@oscar-team.org>" > $share_doc_folder/copyright
changelog_file="$share_doc_folder/changelog"
#automatic changelog as a bad name
# need to generate one and say fpm to use it instead of create one
# it seems that it needs both of them...
# creation of the changelog.Debian.gz
echo "$appli_name (${VERSION}-${ITERATION}) whatever; urgency=medium" > $changelog_file
echo "" >> $changelog_file
echo " * Package created with FPM." >> $changelog_file
echo "" >> $changelog_file
echo " -- oscar-team.org <oscar@oscar-team.org>" >> $changelog_file
gzip --best $changelog_file
description='Open Source CPAP Analysis Reporter\n<extended description needed to be filled with the right value>'
# trick for dummies : need to use echo -e to take care of \n (cariage return to slip description and extra one
description=$(echo -e $description)
# restore umask value
umask $current_value
# create the .deb file (litian test show juste a warning with a man that doesn't exists : don't care about that)
fpm --input-type dir --output-type deb \
--prefix ${dest_folder} \
--before-install ${pre_inst} \
--after-install ${post_inst} \
--before-remove ${pre_rem} \
--after-remove ${post_rem} \
--name ${appli_name} --version ${VERSION} --iteration ${ITERATION} \
--category misc \
--deb-priority optional \
--maintainer " -- oscar-team.org <oscar@oscar-team.org>" \
--license GPL-v3 \
--vendor oscar-team.org \
--description "$description" \
--url https://sleepfiles.com/OSCAR \
--deb-no-default-config-files \
--depends $dblPkg \
--depends libpcre16-3 \
--depends qttranslations5-l10n \
--depends "libqt5core5a > $qtver" \
--depends libqt5serialport5 \
--depends libqt5xml5 \
--depends libqt5network5 \
--depends libqt5gui5 \
--depends libqt5widgets5 \
--depends libqt5opengl5 \
--depends libqt5printsupport5 \
--depends libglu1-mesa \
--depends libgl1 \
--depends libc6 \
--no-deb-generate-changes \
-C ${temp_folder} \
.

6
Building/Linux/rm_usrlocalbin.sh
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@ -1,6 +0,0 @@
#! /bin/bash
#
mv /opt/OSCAR /opt/tempDir
rm /usr/bin/OSCAR
rm /home/$SUDO_USER/Desktop/OSCAR.desktop
#

5
Htmldocs/release_notes.html
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@ -21,10 +21,15 @@
</ul>
<li>[new] Add the "peak flow" channel reported by pre-DreamStation ventilators.</li>
<li>[new] Automatically detect and resolve graphics-related crashes on Windows.</li>
<li>[new] Support AVAPS in the Overview pressure chart.</li>
<li>[fix] Fix missing bars in the Overview pressure chart for Philips Respironics devices.</li>
<li>[fix] Add missing Philips Respironics pressure channels to CSV export.</li>
<li>[fix] Fix zero Philips Respironics AHI in CSV session export.</li>
<li>[fix] Add support for the Bi-Flex lock setting on pre-DreamStation ventilators.</li>
<li>[fix] Fix the pressure waveform scale for the BiPAP autoSV Advanced 30 (960T)</li>
<li>[fix] Add support for rise time mode on DreamStation BiPAP devices (600X-700X).</li>
<li>[fix] Remove the ramp time and pressure settings when the ramp is disabled on pre-DreamStation devices.</li>
<li>[fix] Improve import of Philips Respironics oximetry data.</li>
<li>[fix] Fix occasional failure to save imported Viatom data.</li>
</ul>
<p>

21
dumpSTR/main.cpp
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@ -54,6 +54,8 @@ void usage() {
qDebug() << "\t-g ### First signal";
qDebug() << "\t-m ### Last signal";
qDebug() << "\t-s Signal list only";
qDebug() << "\t-H Don't print the header";
qDebug() << "\t-S Don't print signals list";
qDebug() << "\t-h or -? This help message";
}
@ -77,6 +79,7 @@ int main(int argc, char *argv[]) {
QString filename = args[args.size()-1];
bool showall = false, brief = false;
bool skipHeader = false, skipSignals = false;
for (int i = 1; i < args.size()-1; i++) {
if (args[i] == "-f")
@ -91,6 +94,10 @@ int main(int argc, char *argv[]) {
showall = true;
else if (args[i] == "-s")
brief = true;
else if (args[i] == "-H")
skipHeader = true;
else if (args[i] == "-S")
skipSignals = true;
else if ((args[i] == "-?") || (args[i] == "-h")) {
usage();
exit(0);
@ -116,17 +123,19 @@ int main(int argc, char *argv[]) {
QDate date = str.edfHdr.startdate_orig.date(); // each STR.edf record starts at 12 noon
int numDays = str.GetNumDataRecords();
qDebug() << str.filename << " starts at " << date << " for " << str.GetNumDataRecords()
<< " days, with " << str.GetNumSignals() << " signals";
qDebug() << str.filename << " starts at " << date << " for " << numDays
<< " days, ending at " << date.addDays(numDays) << " with " << str.GetNumSignals() << " signals";
if (args.size() == 2) {
exit(0);
}
dumpHeader( (str.edfHdr) );
dumpSignals( (str.edfsignals) );
if ( ! skipHeader)
dumpHeader( (str.edfHdr) );
if ( ! skipSignals )
dumpSignals( (str.edfsignals) );
if ( brief )
exit(0);
@ -142,7 +151,7 @@ int main(int argc, char *argv[]) {
if (lastSig == 0 )
lastSig = str.GetNumSignals();
if (((first > 0)&&(last == 0)) || last > size)
if ((last == 0) || (last > size))
last = size;
date = date.addDays(first);

239
oscar/Graphs/gPressureChart.cpp Normal file
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@ -0,0 +1,239 @@
/* gPressureChart Implementation
*
* Copyright (c) 2020 The Oscar Team
* Copyright (c) 2011-2018 Mark Watkins <mark@jedimark.net>
*
* This file is subject to the terms and conditions of the GNU General Public
* License. See the file COPYING in the main directory of the source code
* for more details. */
#include "gPressureChart.h"
gPressureChart::gPressureChart()
: gSummaryChart("Pressure", MT_CPAP)
{
addCalc(CPAP_Pressure, ST_SETMAX);
addCalc(CPAP_Pressure, ST_MID);
addCalc(CPAP_Pressure, ST_90P);
addCalc(CPAP_PressureMin, ST_SETMIN);
addCalc(CPAP_PressureMax, ST_SETMAX);
addCalc(CPAP_EPAP, ST_SETMAX);
addCalc(CPAP_IPAP, ST_SETMAX);
addCalc(CPAP_EPAPLo, ST_SETMAX);
addCalc(CPAP_IPAPHi, ST_SETMAX);
addCalc(CPAP_EPAP, ST_MID);
addCalc(CPAP_EPAP, ST_90P);
addCalc(CPAP_IPAP, ST_MID);
addCalc(CPAP_IPAP, ST_90P);
// PRS1 reports pressure adjustments instead of observed pressures on some machines
addCalc(CPAP_PressureSet, ST_MID);
addCalc(CPAP_PressureSet, ST_90P);
addCalc(CPAP_EPAPSet, ST_MID);
addCalc(CPAP_EPAPSet, ST_90P);
addCalc(CPAP_IPAPSet, ST_MID);
addCalc(CPAP_IPAPSet, ST_90P);
}
int gPressureChart::addCalc(ChannelID code, SummaryType type)
{
QColor color = schema::channel[code].defaultColor();
if (type == ST_90P) {
color = brighten(color, 1.33f);
}
int index = gSummaryChart::addCalc(code, type, color);
// Save the code and type used to add this calculation so that getCalc()
// can retrieve it by code and type instead of by hard-coded index.
m_calcs[code][type] = index;
return index;
}
SummaryCalcItem* gPressureChart::getCalc(ChannelID code, SummaryType type)
{
return &calcitems[m_calcs[code][type]];
}
void gPressureChart::afterDraw(QPainter &, gGraph &graph, QRectF rect)
{
QStringList presstr;
if (getCalc(CPAP_Pressure)->cnt > 0) {
presstr.append(channelRange(CPAP_Pressure, STR_TR_CPAP));
}
if (getCalc(CPAP_PressureMin, ST_SETMIN)->cnt > 0) {
// TODO: If using machines from different manufacturers in an overview,
// the below may not accurately find the APAP pressure channel for all
// days; but it only affects the summary label at the top.
ChannelID pressure = CPAP_Pressure;
if (getCalc(CPAP_PressureSet, ST_MID)->cnt > 0) {
pressure = CPAP_PressureSet;
}
presstr.append(QString("%1 %2/%3/%4/%5").
arg(STR_TR_APAP).
arg(getCalc(CPAP_PressureMin, ST_SETMIN)->min,0,'f',1).
arg(getCalc(pressure, ST_MID)->mid(), 0, 'f', 1).
arg(getCalc(pressure, ST_90P)->mid(),0,'f',1).
arg(getCalc(CPAP_PressureMax, ST_SETMAX)->max, 0, 'f', 1));
}
if (getCalc(CPAP_EPAP)->cnt > 0) {
// See CPAP_PressureSet note above.
ChannelID epap = CPAP_EPAP;
if (getCalc(CPAP_EPAPSet, ST_MID)->cnt > 0) {
epap = CPAP_EPAPSet;
}
presstr.append(channelRange(epap, STR_TR_EPAP));
}
if (getCalc(CPAP_IPAP)->cnt > 0) {
// See CPAP_PressureSet note above.
ChannelID ipap = CPAP_IPAP;
if (getCalc(CPAP_IPAPSet, ST_MID)->cnt > 0) {
ipap = CPAP_IPAPSet;
}
presstr.append(channelRange(ipap, STR_TR_IPAP));
}
if (getCalc(CPAP_EPAPLo)->cnt > 0) {
presstr.append(channelRange(CPAP_EPAPLo, STR_TR_EPAPLo));
}
if (getCalc(CPAP_IPAPHi)->cnt > 0) {
presstr.append(channelRange(CPAP_IPAPHi, STR_TR_IPAPHi));
}
QString txt = presstr.join(" ");
graph.renderText(txt, rect.left(), rect.top()-5*graph.printScaleY(), 0);
}
QString gPressureChart::channelRange(ChannelID code, const QString & label)
{
SummaryCalcItem* calc = getCalc(code);
return QString("%1 %2/%3/%4").
arg(label).
arg(calc->min, 0, 'f', 1).
arg(calc->mid(), 0, 'f', 1).
arg(calc->max, 0, 'f', 1);
}
void gPressureChart::addSlice(ChannelID code, SummaryType type)
{
float value = 0;
QString label;
switch (type) {
case ST_SETMIN:
value = m_day->settings_min(code);
label = schema::channel[code].label();
break;
case ST_SETMAX:
value = m_day->settings_max(code);
label = schema::channel[code].label();
break;
case ST_MID:
value = m_day->calcMiddle(code);
label = m_day->calcMiddleLabel(code);
break;
case ST_90P:
value = m_day->calcPercentile(code);
label = m_day->calcPercentileLabel(code);
break;
default:
qWarning() << "Unsupported summary type in gPressureChart";
break;
}
SummaryCalcItem* calc = getCalc(code, type);
float height = value - m_height;
m_slices->append(SummaryChartSlice(calc, value, height, label, calc->color));
m_height += height;
}
void gPressureChart::populate(Day * day, int idx)
{
CPAPMode mode = (CPAPMode)(int)qRound(day->settings_wavg(CPAP_Mode));
m_day = day;
m_slices = &cache[idx];
m_height = 0;
if (mode == MODE_CPAP) {
addSlice(CPAP_Pressure);
} else if (mode == MODE_APAP) {
addSlice(CPAP_PressureMin, ST_SETMIN);
if (!day->summaryOnly()) {
// Handle PRS1 pressure adjustments reported separately from average (EPAP) pressure
ChannelID pressure = CPAP_Pressure;
if (m_day->channelHasData(CPAP_PressureSet)) {
pressure = CPAP_PressureSet;
}
addSlice(pressure, ST_MID);
addSlice(pressure, ST_90P);
}
addSlice(CPAP_PressureMax, ST_SETMAX);
} else if (mode == MODE_BILEVEL_FIXED) {
addSlice(CPAP_EPAP);
addSlice(CPAP_IPAP);
} else if (mode == MODE_BILEVEL_AUTO_FIXED_PS) {
addSlice(CPAP_EPAPLo);
if (!day->summaryOnly()) {
addSlice(CPAP_EPAP, ST_MID);
addSlice(CPAP_EPAP, ST_90P);
addSlice(CPAP_IPAP, ST_MID);
addSlice(CPAP_IPAP, ST_90P);
}
addSlice(CPAP_IPAPHi);
} else if ((mode == MODE_BILEVEL_AUTO_VARIABLE_PS) || (mode == MODE_ASV_VARIABLE_EPAP)) {
addSlice(CPAP_EPAPLo);
if (!day->summaryOnly()) {
// Handle PRS1 pressure adjustments when reported instead of observed pressures
ChannelID epap = CPAP_EPAP;
if (m_day->channelHasData(CPAP_EPAPSet)) {
epap = CPAP_EPAPSet;
}
ChannelID ipap = CPAP_IPAP;
if (m_day->channelHasData(CPAP_IPAPSet)) {
ipap = CPAP_IPAPSet;
}
addSlice(epap, ST_MID);
addSlice(epap, ST_90P);
addSlice(ipap, ST_MID);
addSlice(ipap, ST_90P);
}
addSlice(CPAP_IPAPHi);
} else if (mode == MODE_ASV) {
addSlice(CPAP_EPAP);
if (!day->summaryOnly()) {
addSlice(CPAP_IPAP, ST_MID);
addSlice(CPAP_IPAP, ST_90P);
}
addSlice(CPAP_IPAPHi);
} else if (mode == MODE_AVAPS) {
addSlice(CPAP_EPAP);
if (!day->summaryOnly()) {
addSlice(CPAP_IPAP, ST_MID);
addSlice(CPAP_IPAP, ST_90P);
}
addSlice(CPAP_IPAPHi);
}
}

61
oscar/Graphs/gPressureChart.h Normal file
View File

@ -0,0 +1,61 @@
/* gPressureChart Header
*
* Copyright (c) 2020 The Oscar Team
* Copyright (C) 2011-2018 Mark Watkins <mark@jedimark.net>
*
* This file is subject to the terms and conditions of the GNU General Public
* License. See the file COPYING in the main directory of the source code
* for more details. */
#ifndef GPRESSURECHART_H
#define GPRESSURECHART_H
#include "gSessionTimesChart.h"
class gPressureChart : public gSummaryChart
{
public:
gPressureChart();
virtual ~gPressureChart() {}
virtual Layer * Clone() {
gPressureChart * sc = new gPressureChart();
gSummaryChart::CloneInto(sc);
return sc;
}
// virtual void preCalc();
virtual void customCalc(Day *day, QVector<SummaryChartSlice> &slices) {
int size = slices.size();
float hour = day->hours(m_machtype);
for (int i=0; i < size; ++i) {
SummaryChartSlice & slice = slices[i];
SummaryCalcItem * calc = slices[i].calc;
calc->update(slice.value, hour);
}
}
virtual void afterDraw(QPainter &, gGraph &, QRectF);
virtual void populate(Day * day, int idx);
virtual QString tooltipData(Day * day, int idx) {
return day->getCPAPModeStr() + "\n" + day->getPressureSettings() + gSummaryChart::tooltipData(day, idx);
}
virtual int addCalc(ChannelID code, SummaryType type);
protected:
SummaryCalcItem* getCalc(ChannelID code, SummaryType type = ST_SETMAX);
QString channelRange(ChannelID code, const QString & label);
void addSlice(ChannelID code, SummaryType type = ST_SETMAX);
QHash<ChannelID,QHash<SummaryType,int>> m_calcs;
// State passed between populate() and addSlice():
Day* m_day;
QVector<SummaryChartSlice>* m_slices;
float m_height;
};
#endif // GPRESSURECHART_H

208
oscar/Graphs/gSessionTimesChart.cpp
View File

@ -1,5 +1,6 @@
/* gSessionTimesChart Implementation
*
* Copyright (c) 2020 The Oscar Team
* Copyright (c) 2011-2018 Mark Watkins <mark@jedimark.net>
*
* This file is subject to the terms and conditions of the GNU General Public
@ -101,6 +102,17 @@ void gSummaryChart::SetDay(Day *unused_day)
//QMap<QDate, int> gSummaryChart::dayindex;
//QList<Day *> gSummaryChart::daylist;
int gSummaryChart::addCalc(ChannelID code, SummaryType type, QColor color)
{
calcitems.append(SummaryCalcItem(code, type, color));
return calcitems.size() - 1; // return the index of the newly appended calc
}
int gSummaryChart::addCalc(ChannelID code, SummaryType type)
{
return addCalc(code, type, schema::channel[code].defaultColor());
}
bool gSummaryChart::keyPressEvent(QKeyEvent *event, gGraph *graph)
{
@ -1288,199 +1300,3 @@ QString gAHIChart::tooltipData(Day *day, int idx)
}
return QString("\n%1: %2").arg(STR_TR_AHI).arg(float(total) / hour,0,'f',2)+txt;
}
gPressureChart::gPressureChart()
:gSummaryChart("Pressure", MT_CPAP)
{
// Do not reorder these!!! :P
addCalc(CPAP_Pressure, ST_SETMAX, schema::channel[CPAP_Pressure].defaultColor()); // 00
addCalc(CPAP_Pressure, ST_MID, schema::channel[CPAP_Pressure].defaultColor()); // 01
addCalc(CPAP_Pressure, ST_90P, brighten(schema::channel[CPAP_Pressure].defaultColor(), 1.33f)); // 02
addCalc(CPAP_PressureMin, ST_SETMIN, schema::channel[CPAP_PressureMin].defaultColor()); // 03
addCalc(CPAP_PressureMax, ST_SETMAX, schema::channel[CPAP_PressureMax].defaultColor()); // 04
addCalc(CPAP_EPAP, ST_SETMAX, schema::channel[CPAP_EPAP].defaultColor()); // 05
addCalc(CPAP_IPAP, ST_SETMAX, schema::channel[CPAP_IPAP].defaultColor()); // 06
addCalc(CPAP_EPAPLo, ST_SETMAX, schema::channel[CPAP_EPAPLo].defaultColor()); // 07
addCalc(CPAP_IPAPHi, ST_SETMAX, schema::channel[CPAP_IPAPHi].defaultColor()); // 08
addCalc(CPAP_EPAP, ST_MID, schema::channel[CPAP_EPAP].defaultColor()); // 09
addCalc(CPAP_EPAP, ST_90P, brighten(schema::channel[CPAP_EPAP].defaultColor(),1.33f)); // 10
addCalc(CPAP_IPAP, ST_MID, schema::channel[CPAP_IPAP].defaultColor()); // 11
addCalc(CPAP_IPAP, ST_90P, brighten(schema::channel[CPAP_IPAP].defaultColor(),1.33f)); // 12
}
void gPressureChart::afterDraw(QPainter &, gGraph &graph, QRectF rect)
{
int pressure_cnt = calcitems[0].cnt;
int pressuremin_cnt = calcitems[3].cnt;
int epap_cnt = calcitems[5].cnt;
int ipap_cnt = calcitems[6].cnt;
int ipaphi_cnt = calcitems[8].cnt;
int epaplo_cnt = calcitems[7].cnt;
QStringList presstr;
float mid = 0;
if (pressure_cnt > 0) {
mid = calcitems[0].mid();
presstr.append(QString("%1 %2/%3/%4").
arg(STR_TR_CPAP).
arg(calcitems[0].min,0,'f',1).
arg(mid, 0, 'f', 1).
arg(calcitems[0].max,0,'f',1));
}
if (pressuremin_cnt > 0) {
presstr.append(QString("%1 %2/%3/%4/%5").
arg(STR_TR_APAP).
arg(calcitems[3].min,0,'f',1).
arg(calcitems[1].mid(), 0, 'f', 1).
arg(calcitems[2].mid(),0,'f',1).
arg(calcitems[4].max, 0, 'f', 1));
}
if (epap_cnt > 0) {
presstr.append(QString("%1 %2/%3/%4").
arg(STR_TR_EPAP).
arg(calcitems[5].min,0,'f',1).
arg(calcitems[5].mid(), 0, 'f', 1).
arg(calcitems[5].max, 0, 'f', 1));
}
if (ipap_cnt > 0) {
presstr.append(QString("%1 %2/%3/%4").
arg(STR_TR_IPAP).
arg(calcitems[6].min,0,'f',1).
arg(calcitems[6].mid(), 0, 'f', 1).
arg(calcitems[6].max, 0, 'f', 1));
}
if (epaplo_cnt > 0) {
presstr.append(QString("%1 %2/%3/%4").
arg(STR_TR_EPAPLo).
arg(calcitems[7].min,0,'f',1).
arg(calcitems[7].mid(), 0, 'f', 1).
arg(calcitems[7].max, 0, 'f', 1));
}
if (ipaphi_cnt > 0) {
presstr.append(QString("%1 %2/%3/%4").
arg(STR_TR_IPAPHi).
arg(calcitems[8].min,0,'f',1).
arg(calcitems[8].mid(), 0, 'f', 1).
arg(calcitems[8].max, 0, 'f', 1));
}
QString txt = presstr.join(" ");
graph.renderText(txt, rect.left(), rect.top()-5*graph.printScaleY(), 0);
}
void gPressureChart::populate(Day * day, int idx)
{
float tmp;
CPAPMode mode = (CPAPMode)(int)qRound(day->settings_wavg(CPAP_Mode));
QVector<SummaryChartSlice> & slices = cache[idx];
if (mode == MODE_CPAP) {
float pr = day->settings_max(CPAP_Pressure);
slices.append(SummaryChartSlice(&calcitems[0], pr, pr, schema::channel[CPAP_Pressure].label(), calcitems[0].color));
} else if (mode == MODE_APAP) {
float min = day->settings_min(CPAP_PressureMin);
float max = day->settings_max(CPAP_PressureMax);
tmp = min;
slices.append(SummaryChartSlice(&calcitems[3], min, min, schema::channel[CPAP_PressureMin].label(), calcitems[3].color));
if (!day->summaryOnly()) {
float med = day->calcMiddle(CPAP_Pressure);
slices.append(SummaryChartSlice(&calcitems[1], med, med - tmp, day->calcMiddleLabel(CPAP_Pressure), calcitems[1].color));
tmp += med - tmp;
float p90 = day->calcPercentile(CPAP_Pressure);
slices.append(SummaryChartSlice(&calcitems[2], p90, p90 - tmp, day->calcPercentileLabel(CPAP_Pressure), calcitems[2].color));
tmp += p90 - tmp;
}
slices.append(SummaryChartSlice(&calcitems[4], max, max - tmp, schema::channel[CPAP_PressureMax].label(), calcitems[4].color));
} else if (mode == MODE_BILEVEL_FIXED) {
float epap = day->settings_max(CPAP_EPAP);
float ipap = day->settings_max(CPAP_IPAP);
slices.append(SummaryChartSlice(&calcitems[5], epap, epap, schema::channel[CPAP_EPAP].label(), calcitems[5].color));
slices.append(SummaryChartSlice(&calcitems[6], ipap, ipap - epap, schema::channel[CPAP_IPAP].label(), calcitems[6].color));
} else if (mode == MODE_BILEVEL_AUTO_FIXED_PS) {
float epap = day->settings_max(CPAP_EPAPLo);
tmp = epap;
float ipap = day->settings_max(CPAP_IPAPHi);
slices.append(SummaryChartSlice(&calcitems[7], epap, epap, schema::channel[CPAP_EPAPLo].label(), calcitems[7].color));
if (!day->summaryOnly()) {
float e50 = day->calcMiddle(CPAP_EPAP);
slices.append(SummaryChartSlice(&calcitems[9], e50, e50 - tmp, day->calcMiddleLabel(CPAP_EPAP), calcitems[9].color));
tmp += e50 - tmp;
float e90 = day->calcPercentile(CPAP_EPAP);
slices.append(SummaryChartSlice(&calcitems[10], e90, e90 - tmp, day->calcPercentileLabel(CPAP_EPAP), calcitems[10].color));
tmp += e90 - tmp;
float i50 = day->calcMiddle(CPAP_IPAP);
slices.append(SummaryChartSlice(&calcitems[11], i50, i50 - tmp, day->calcMiddleLabel(CPAP_IPAP), calcitems[11].color));
tmp += i50 - tmp;
float i90 = day->calcPercentile(CPAP_IPAP);
slices.append(SummaryChartSlice(&calcitems[12], i90, i90 - tmp, day->calcPercentileLabel(CPAP_IPAP), calcitems[12].color));
tmp += i90 - tmp;
}
slices.append(SummaryChartSlice(&calcitems[8], ipap, ipap - tmp, schema::channel[CPAP_IPAPHi].label(), calcitems[8].color));
} else if ((mode == MODE_BILEVEL_AUTO_VARIABLE_PS) || (mode == MODE_ASV_VARIABLE_EPAP)) {
float epap = day->settings_max(CPAP_EPAPLo);
tmp = epap;
slices.append(SummaryChartSlice(&calcitems[7], epap, epap, schema::channel[CPAP_EPAPLo].label(), calcitems[7].color));
if (!day->summaryOnly()) {
float e50 = day->calcMiddle(CPAP_EPAP);
slices.append(SummaryChartSlice(&calcitems[9], e50, e50 - tmp, day->calcMiddleLabel(CPAP_EPAP), calcitems[9].color));
tmp += e50 - tmp;
float e90 = day->calcPercentile(CPAP_EPAP);
slices.append(SummaryChartSlice(&calcitems[10], e90, e90 - tmp, day->calcPercentileLabel(CPAP_EPAP), calcitems[10].color));
tmp += e90 - tmp;
float i50 = day->calcMiddle(CPAP_IPAP);
slices.append(SummaryChartSlice(&calcitems[11], i50, i50 - tmp, day->calcMiddleLabel(CPAP_IPAP), calcitems[11].color));
tmp += i50 - tmp;
float i90 = day->calcPercentile(CPAP_IPAP);
slices.append(SummaryChartSlice(&calcitems[12], i90, i90 - tmp, day->calcPercentileLabel(CPAP_IPAP), calcitems[12].color));
tmp += i90 - tmp;
}
float ipap = day->settings_max(CPAP_IPAPHi);
slices.append(SummaryChartSlice(&calcitems[8], ipap, ipap - tmp, schema::channel[CPAP_IPAPHi].label(), calcitems[8].color));
} else if (mode == MODE_ASV) {
float epap = day->settings_max(CPAP_EPAP);
tmp = epap;
slices.append(SummaryChartSlice(&calcitems[5], epap, epap, schema::channel[CPAP_EPAP].label(), calcitems[5].color));
if (!day->summaryOnly()) {
float i50 = day->calcMiddle(CPAP_IPAP);
slices.append(SummaryChartSlice(&calcitems[11], i50, i50 - tmp, day->calcMiddleLabel(CPAP_IPAP), calcitems[11].color));
tmp += i50 - tmp;
float i90 = day->calcPercentile(CPAP_IPAP);
slices.append(SummaryChartSlice(&calcitems[12], i90, i90 - tmp, day->calcPercentileLabel(CPAP_IPAP), calcitems[12].color));
tmp += i90 - tmp;
}
float ipap = day->settings_max(CPAP_IPAPHi);
slices.append(SummaryChartSlice(&calcitems[8], ipap, ipap - tmp, schema::channel[CPAP_IPAPHi].label(), calcitems[8].color));
}
}
//void gPressureChart::afterDraw(QPainter &painter, gGraph &graph, QRect rect)
//{
//}

45
oscar/Graphs/gSessionTimesChart.h
View File

@ -1,5 +1,6 @@
/* gSessionTimesChart Header
/* gSessionTimesChart Header
*
* Copyright (c) 2020 The Oscar Team
* Copyright (C) 2011-2018 Mark Watkins <mark@jedimark.net>
*
* This file is subject to the terms and conditions of the GNU General Public
@ -188,13 +189,8 @@ public:
cache.clear();
}
void addCalc(ChannelID code, SummaryType type, QColor color) {
calcitems.append(SummaryCalcItem(code, type, color));
}
void addCalc(ChannelID code, SummaryType type) {
calcitems.append(SummaryCalcItem(code, type, schema::channel[code].defaultColor()));
}
virtual int addCalc(ChannelID code, SummaryType type, QColor color);
virtual int addCalc(ChannelID code, SummaryType type);
virtual Layer * Clone() {
gSummaryChart * sc = new gSummaryChart(m_label, m_machtype);
@ -429,37 +425,4 @@ public:
};
class gPressureChart : public gSummaryChart
{
public:
gPressureChart();
virtual ~gPressureChart() {}
virtual Layer * Clone() {
gPressureChart * sc = new gPressureChart();
gSummaryChart::CloneInto(sc);
return sc;
}
// virtual void preCalc();
virtual void customCalc(Day *day, QVector<SummaryChartSlice> &slices) {
int size = slices.size();
float hour = day->hours(m_machtype);
for (int i=0; i < size; ++i) {
SummaryChartSlice & slice = slices[i];
SummaryCalcItem * calc = slices[i].calc;
calc->update(slice.value, hour);
}
}
virtual void afterDraw(QPainter &, gGraph &, QRectF);
virtual void populate(Day * day, int idx);
virtual QString tooltipData(Day * day, int idx) {
return day->getCPAPModeStr() + "\n" + day->getPressureSettings() + gSummaryChart::tooltipData(day, idx);
}
};
#endif // GSESSIONTIMESCHART_H

4
oscar/SleepLib/loader_plugins/edfparser.cpp
View File

@ -134,7 +134,7 @@ bool EDFInfo::parseHeader( EDFHeaderRaw *hdrPtr )
}
edfHdr.reserved44=QString::fromLatin1(hdrPtr->reserved, 44).trimmed();
edfHdr.num_data_records = QString::fromLatin1(hdrPtr->num_data_records, 8).toLong(&ok);
if (!ok) {
if ( (! ok) || (edfHdr.num_data_records < 1) ) {
qWarning() << "EDFInfo::Parse() Bad data record count " << filename;
// sleep(1);
fileData.clear();
@ -148,7 +148,7 @@ bool EDFInfo::parseHeader( EDFHeaderRaw *hdrPtr )
return false;
}
edfHdr.num_signals = QString::fromLatin1(hdrPtr->num_signals, 4).toLong(&ok);
if (!ok) {
if ( (! ok) || (edfHdr.num_signals < 1) || (edfHdr.num_signals > 256) ) {
qWarning() << "EDFInfo::Parse() Bad number of signals " << filename;
// sleep(1);
fileData.clear();

83
oscar/SleepLib/loader_plugins/prs1_loader.cpp
View File

@ -982,12 +982,9 @@ void PRS1Loader::ScanFiles(const QStringList & paths, int sessionid_base, Machin
// All samples exhibiting this behavior are DreamStations.
task->m_wavefiles.append(fi.canonicalFilePath());
} else if (ext == 6) {
if (!task->oxifile.isEmpty()) {
qDebug() << sid << "already has oximetry file" << relativePath(task->oxifile)
<< "skipping" << relativePath(fi.canonicalFilePath());
continue;
}
task->oxifile = fi.canonicalFilePath();
// Oximetry data can also be split into multiple files, see waveform
// comment above.
task->m_oxifiles.append(fi.canonicalFilePath());
}
continue;
@ -6854,12 +6851,16 @@ bool PRS1DataChunk::ParseSettingsF0V6(const unsigned char* data, int size)
CHECK_VALUES(data[pos], 1, 2); // 1 when EZ-Start is enabled? 2 when Auto-Trial? 3 when Auto-Trial is off or Opti-Start isn't off?
}
if (len == 2) { // 400G, 500G has extra byte
// 0x80 seen with EZ-Start and CPAP-Check+ on 500X150
if (data[pos+1] != 0x80) {
// 0x10 seen with EZ-Start enabled, Opti-Start off on 500X110
// 0x20 seen with Opti-Start enabled
// 0x30 seen with both Opti-Start and EZ-Start enabled on 500X110
CHECK_VALUE(data[pos+1] & ~(0x10 | 0x20), 0);
switch (data[pos+1]) {
case 0x00: // 0x00 seen with EZ-Start disabled, no auto-trial, with CPAP-Check on 400X110
case 0x10: // 0x10 seen with EZ-Start enabled, Opti-Start off on 500X110
case 0x20: // 0x20 seen with Opti-Start enabled
case 0x30: // 0x30 seen with both Opti-Start and EZ-Start enabled on 500X110
case 0x40: // 0x40 seen with Auto-Trial
case 0x80: // 0x80 seen with EZ-Start and CPAP-Check+ on 500X150
break;
default:
UNEXPECTED_VALUE(data[pos+1], "[0,0x10,0x20,0x30,0x40,0x80]")
}
}
break;
@ -6919,7 +6920,9 @@ bool PRS1DataChunk::ParseSettingsF0V6(const unsigned char* data, int size)
// but curiously report the use of C-Flex+, even though Auto-CPAP uses A-Flex.
CHECK_VALUE(len, 3);
CHECK_VALUES(cpapmode, PRS1_MODE_CPAP, PRS1_MODE_CPAPCHECK);
CHECK_VALUES(data[pos], 30, 5); // Auto-Trial Duration
if (data[pos] != 30) {
CHECK_VALUES(data[pos], 5, 25); // Auto-Trial Duration
}
this->AddEvent(new PRS1ParsedSettingEvent(PRS1_SETTING_AUTO_TRIAL, data[pos]));
// If we want C-Flex+ to be reported as A-Flex, we can set cpapmode = PRS1_MODE_AUTOTRIAL here.
// (Note that the setting event has already been added above, which is why ImportSummary needs
@ -7131,7 +7134,7 @@ bool PRS1DataChunk::ParseSummaryF0V6(void)
qWarning() << this->sessionid << "summary data too short:" << chunk_size;
return false;
}
if (chunk_size < 60) UNEXPECTED_VALUE(chunk_size, ">= 60");
if (chunk_size < 59) UNEXPECTED_VALUE(chunk_size, ">= 59");
bool ok = true;
int pos = 0;
@ -8152,7 +8155,7 @@ QList<PRS1DataChunk *> PRS1Import::CoalesceWaveformChunks(QList<PRS1DataChunk *>
}
void PRS1Import::ParseOximetry()
void PRS1Import::ImportOximetry()
{
int size = oximetry.size();
@ -8208,10 +8211,10 @@ void PRS1Import::ImportOximetryChannel(ChannelID channel, QByteArray & data, qui
quint64 start_ti;
int start_i;
// Split eventlist on invalid values (255)
// Split eventlist on invalid values (254-255)
for (int i=0; i < data.size(); i++) {
unsigned char value = raw[i];
bool valid = (value != 255);
bool valid = (value < 254);
if (valid) {
if (pending_samples == false) {
@ -8221,7 +8224,7 @@ void PRS1Import::ImportOximetryChannel(ChannelID channel, QByteArray & data, qui
}
if (channel == OXI_Pulse) {
if (value > 200) UNEXPECTED_VALUE(value, "<= 200 bpm");
if (value > 240) UNEXPECTED_VALUE(value, "<= 240 bpm");
} else {
if (value > 100) UNEXPECTED_VALUE(value, "<= 100%");
}
@ -8245,7 +8248,7 @@ void PRS1Import::ImportOximetryChannel(ChannelID channel, QByteArray & data, qui
}
void PRS1Import::ParseWaveforms()
void PRS1Import::ImportWaveforms()
{
int size = waveforms.size();
quint64 s1, s2;
@ -8413,7 +8416,7 @@ bool PRS1Import::ParseSession(void)
// If are no mask-on slices, then there's not any meaningful event or waveform data for the session.
// If there's no no event or waveform data, mark this session as a summary.
if (session->m_slices.count() == 0 || (m_event_chunks.count() == 0 && m_wavefiles.isEmpty() && oxifile.isEmpty())) {
if (session->m_slices.count() == 0 || (m_event_chunks.count() == 0 && m_wavefiles.isEmpty() && m_oxifiles.isEmpty())) {
session->setSummaryOnly(true);
save = true;
break; // and skip the occasional fragmentary event or waveform data
@ -8430,14 +8433,18 @@ bool PRS1Import::ParseSession(void)
if (!m_wavefiles.isEmpty()) {
// Parse .005 Waveform files
waveforms = ReadWaveformData(m_wavefiles, "Waveform");
// Extract and import raw data into channels.
ImportWaveforms();
}
if (!oxifile.isEmpty()) {
// Parse .006 Waveform file
oximetry = loader->ParseFile(oxifile);
oximetry = CoalesceWaveformChunks(oximetry);
ParseOximetry();
if (!m_oxifiles.isEmpty()) {
// Parse .006 Waveform files
oximetry = ReadWaveformData(m_oxifiles, "Oximetry");
// Extract and import raw data into channels.
ImportOximetry();
}
save = true;
@ -8447,16 +8454,17 @@ bool PRS1Import::ParseSession(void)
}
void PRS1Import::ImportWaveforms()
QList<PRS1DataChunk *> PRS1Import::ReadWaveformData(QList<QString> & files, const char* label)
{
QMap<qint64,PRS1DataChunk *> waveform_chunks;
QList<PRS1DataChunk *> result;
if (m_wavefiles.count() > 1) {
qDebug() << session->session() << "Waveform data split across multiple files";
if (files.count() > 1) {
qDebug() << session->session() << label << "data split across multiple files";
}
for (auto & f : m_wavefiles) {
// Parse a single .005 Waveform file
for (auto & f : files) {
// Parse a single .005 or .006 waveform file
QList<PRS1DataChunk *> file_chunks = loader->ParseFile(f);
for (auto & chunk : file_chunks) {
PRS1DataChunk* previous = waveform_chunks[chunk->timestamp];
@ -8471,21 +8479,12 @@ void PRS1Import::ImportWaveforms()
}
// Get the list of pointers sorted by timestamp.
waveforms = waveform_chunks.values();
result = waveform_chunks.values();
// Coalesce contiguous waveform chunks into larger chunks.
waveforms = CoalesceWaveformChunks(waveforms);
result = CoalesceWaveformChunks(result);
if (session->eventlist.contains(CPAP_FlowRate)) {
if (waveforms.size() > 0) {
// Delete anything called "Flow rate" picked up in the events file if real data is present
qWarning() << session->session() << "Deleting flow rate events due to flow rate waveform data";
session->destroyEvent(CPAP_FlowRate);
}
}
// Extract raw data into channels.
ParseWaveforms();
return result;
}

10
oscar/SleepLib/loader_plugins/prs1_loader.h
View File

@ -295,7 +295,7 @@ public:
QList<QString> m_wavefiles;
QString oxifile;
QList<QString> m_oxifiles;
//! \brief Imports .000 files for bricks.
bool ImportCompliance();
@ -306,17 +306,17 @@ public:
//! \brief Imports the .002 event file(s).
bool ImportEvents();
//! \brief Imports the .005 event file(s).
void ImportWaveforms();
//! \brief Reads the .005 or .006 waveform file(s).
QList<PRS1DataChunk *> ReadWaveformData(QList<QString> & files, const char* label);
//! \brief Coalesce contiguous .005 or .006 waveform chunks from the file into larger chunks for import.
QList<PRS1DataChunk *> CoalesceWaveformChunks(QList<PRS1DataChunk *> & allchunks);
//! \brief Takes the parsed list of Flow/MaskPressure waveform chunks and adds them to the database
void ParseWaveforms();
void ImportWaveforms();
//! \brief Takes the parsed list of oximeter waveform chunks and adds them to the database.
void ParseOximetry();
void ImportOximetry();
//! \brief Adds a single channel of continuous oximetry data to the database, splitting on any missing samples.
void ImportOximetryChannel(ChannelID channel, QByteArray & data, quint64 ti, qint64 dur);

6
oscar/SleepLib/loader_plugins/resmed_EDFinfo.cpp
View File

@ -30,7 +30,11 @@ ResMedEDFInfo::~ResMedEDFInfo() { }
bool ResMedEDFInfo::Parse( ) // overrides and calls the super's Parse
{
EDFInfo::Parse( );
if ( ! EDFInfo::Parse( ) ) {
qWarning() << "EDFInfo::Parse failed!";
sleep(1);
return false;
}
// Now massage some stuff into OSCAR's layout
int snp = edfHdr.recordingident.indexOf("SRN=");

9
oscar/SleepLib/loader_plugins/resmed_EDFinfo.h
View File

@ -229,14 +229,15 @@ class STRFile
{
public:
STRFile() :
filename(QString()), edf(nullptr) {}
STRFile(QString name, ResMedEDFInfo *str) :
filename(name), edf(str) {}
filename(QString()), days(0), edf(nullptr) {}
STRFile(QString name, long int recCnt, ResMedEDFInfo *str) :
filename(name), days(recCnt), edf(str) {}
STRFile(const STRFile & copy) = default;
virtual ~STRFile() {}
QString filename;
QString filename;
long int days;
ResMedEDFInfo * edf;
};

112
oscar/SleepLib/loader_plugins/resmed_loader.cpp
View File

@ -284,14 +284,17 @@ int ResmedLoader::Open(const QString & dirpath)
// Check DATALOG folder exists and is readable
if (!QDir().exists(datalogPath)) {
qDebug() << "Missing DATALOG in" << dirpath;
return -1;
}
m_abort = false;
MachineInfo info = newInfo();
if ( ! parseIdentTGT(path, & info, idmap) )
if ( ! parseIdentTGT(path, & info, idmap) ) {
qDebug() << "Failed to parse Identification.tgt";
return -1;
}
qDebug() << "Info:" << info.series << info.model << info.modelnumber << info.serial;
#ifdef IDENT_DEBUG
@ -303,7 +306,7 @@ int ResmedLoader::Open(const QString & dirpath)
// Abort if no serial number
if (info.serial.isEmpty()) {
qDebug() << "ResMed Data card has no valid serial number in Indentification.tgt";
qDebug() << "ResMed Data card is missing serial number in Indentification.tgt";
return -1;
}
@ -383,9 +386,34 @@ int ResmedLoader::Open(const QString & dirpath)
if ( ! dir.exists(strBackupPath))
dir.mkpath(strBackupPath);
QString newpath = backup_path + "DATALOG";
if ( ! dir.exists(newpath) )
dir.mkpath(newpath);
if ( ! importing_backups ) {
BackupSTRfiles( strpath, path, strBackupPath, info, STRmap );
} // end if not importing the backup files
} else { // get the STR file that is in the BACKUP folder
ResMedEDFInfo * stredf = new ResMedEDFInfo();
if ( stredf->Open(strpath) ) {
if ( stredf->Parse()) {
if (stredf->serialnumber != info.serial) {
qDebug() << "Identification.tgt Serial number doesn't match" << strpath;
delete stredf;
} else { // passed the tests, stuff it into the map
QDate date = stredf->edfHdr.startdate_orig.date();
long int days = stredf->GetNumDataRecords();
qDebug() << strpath << "starts at" << date << "for" << days;
STRmap[date] = STRFile(strpath, days, stredf);
}
} else {
qDebug() << "Faulty STR file" << strpath;
delete stredf;
}
} else {
qDebug() << "Failed to open" << strpath;
delete stredf;
}
} // end if not importing the backup files
#ifdef STR_DEBUG
qDebug() << "STRmap size is " << STRmap.size();
#endif
@ -396,6 +424,7 @@ int ResmedLoader::Open(const QString & dirpath)
dir.setFilter(QDir::Files | QDir::Hidden | QDir::Readable);
QFileInfoList flist = dir.entryInfoList();
QDate date;
long int days;
#ifdef STR_DEBUG
qDebug() << "STR_Backup folder size is " << flist.size();
#endif
@ -407,11 +436,13 @@ int ResmedLoader::Open(const QString & dirpath)
continue;
if (!(filename.endsWith("edf.gz", Qt::CaseInsensitive) || filename.endsWith("edf", Qt::CaseInsensitive)))
continue;
QString datestr = filename.section("STR-",-1).section(".edf",0,0)+"01";
date = QDate().fromString(datestr,"yyyyMMdd");
if (STRmap.contains(date))
continue;
QString datestr = filename.section("STR-",-1).section(".edf",0,0); // +"01";
// date = QDate().fromString(datestr,"yyyyMMdd");
//
// if (STRmap.contains(date)) {
// qDebug() << filename << "overlaps anothor STR file";
// continue;
// }
ResMedEDFInfo * stredf = new ResMedEDFInfo();
if ( ! stredf->Open(fi.canonicalFilePath() ) ) {
@ -433,10 +464,20 @@ int ResmedLoader::Open(const QString & dirpath)
// Don't trust the filename date, pick the one inside the STR...
date = stredf->edfHdr.startdate_orig.date();
qDebug() << "Resetting STR date from" << date.toString() << "to first of month ... WHY???";
date = QDate(date.year(), date.month(), 1);
days = stredf->GetNumDataRecords();
if (STRmap.contains(date)) { // Keep the longer of the two STR files
qDebug() << filename << "overlaps" << STRmap[date].filename << "for" << days;
if (days <= STRmap[date].days) {
qDebug() << "Skipping" << filename;
delete stredf;
continue;
}
}
// qDebug() << "Resetting STR date from" << date.toString() << "to first of month ... WHY???";
// date = QDate(date.year(), date.month(), 1);
STRmap[date] = STRFile(fi.canonicalFilePath(), stredf);
qDebug() << fi.canonicalFilePath() << "starts at" << date << "for" << days;
STRmap[date] = STRFile(fi.canonicalFilePath(), days, stredf);
} // end for walking the STR_Backup directory
#ifdef STR_DEBUG
qDebug() << "STRmap size is now " << STRmap.size();
@ -453,9 +494,21 @@ int ResmedLoader::Open(const QString & dirpath)
// We are done with the Parsed STR EDF objects, so delete them
for (auto it=STRmap.begin(), end=STRmap.end(); it != end; ++it) {
QString fullname = it.value().filename;
#ifdef STR_DEBUG
qDebug() << "Deleting edf of" << it.value().filename;
qDebug() << "Deleting edf of" << fullname;
#endif
QString datepart = fullname.section("STR-",-1).section(".edf",0,0);
if (datepart.size() == 6 ) { // old style name, change to full date
QFile str(fullname);
QString newdate = it.key().toString("yyyyMMdd");
QString newName = fullname.replace(datepart, newdate);
qDebug() << "Renaming" << it.value().filename << "to" << newName;
if ( str.rename(newName) )
qDebug() << "Success";
else
qDebug() << "Failed";
}
delete it.value().edf;
}
#ifdef STR_DEBUG
@ -531,6 +584,8 @@ int ResmedLoader::Open(const QString & dirpath)
sessionCount = 0;
emit updateMessage(QObject::tr("Importing Sessions..."));
// Walk down the resDay list
runTasks();
int num_new_sessions = sessionCount;
@ -683,7 +738,7 @@ int ResmedLoader::ScanFiles(Machine * mach, const QString & datalog_path, QDate
filename = fi.fileName();
int len = filename.length();
if (len == 4) { // when does this happen?
if (len == 4) { // This is a year folder in BackupDATALOG
filename.toInt(&ok);
if ( ! ok ) {
qDebug() << "Skipping directory - bad 4-letter name" << filename;
@ -836,12 +891,13 @@ QString ResmedLoader::Backup(const QString & fullname, const QString & backup_pa
yearstr.toInt(&ok, 10);
if (!ok) {
qDebug() << "Invalid EDF filename given to ResMedLoader::backup()" << fullname;
qDebug() << "Invalid EDF filename given to ResMedLoader::Backup()" << fullname;
return "";
}
QString newpath = backup_path + RMS9_STR_datalog + "/" + yearstr;
!dir.exists(newpath) && dir.mkpath(newpath);
QString newpath = backup_path + "DATALOG" + "/" + yearstr;
if ( ! dir.exists(newpath) )
dir.mkpath(newpath);
newname = newpath+"/"+filename;
@ -894,10 +950,11 @@ bool ResmedLoader::ProcessSTRfiles(Machine *mach, QMap<QDate, STRFile> & STRmap,
for (auto it=STRmap.begin(), end=STRmap.end(); it != end; ++it) {
STRFile & file = it.value();
ResMedEDFInfo & str = *file.edf;
totalRecs += str.GetNumDataRecords();
int days = str.GetNumDataRecords();
totalRecs += days;
#ifdef STR_DEBUG
qDebug() << "STR file is" << file.filename;
qDebug() << "First day" << QDateTime::fromMSecsSinceEpoch(str.startdate, EDFInfo::localNoDST).date().toString() << "for" << totalRecs << "days";
qDebug() << "First day" << QDateTime::fromMSecsSinceEpoch(str.startdate, EDFInfo::localNoDST).date().toString() << "for" << days << "days";
#endif
}
@ -917,7 +974,7 @@ bool ResmedLoader::ProcessSTRfiles(Machine *mach, QMap<QDate, STRFile> & STRmap,
QDate lastDay = date.addDays(size-1);
#ifdef STR_DEBUG
qDebug() << "Parsing" << strfile << date.toString() << size << str.GetNumSignals();
qDebug() << "Processing" << strfile << date.toString() << size << str.GetNumSignals();
qDebug() << "Last day is" << lastDay;
#endif
@ -1383,6 +1440,9 @@ bool ResmedLoader::ProcessSTRfiles(Machine *mach, QMap<QDate, STRFile> & STRmap,
qDebug() << "Finished" << date.toString();
#endif
}
#ifdef STR_DEBUG
qDebug() << "Finished" << strfile;
#endif
}
#ifdef STR_DEBUG
qDebug() << "Finished ProcessSTR";
@ -1462,13 +1522,17 @@ void BackupSTRfiles( const QString strpath, const QString path, const QString st
continue;
}
QDate date = stredf->edfHdr.startdate_orig.date();
date = QDate(date.year(), date.month(), 1);
long int days = stredf->GetNumDataRecords();
// date = QDate(date.year(), date.month(), 1);
if (STRmap.contains(date)) {
qDebug() << "STRmap already contains" << date.toString("YYYY-MM-dd");
delete stredf;
continue;
if ( days <= STRmap[date].days ) {
qDebug() << "Skipping" << filename;
delete stredf;
continue;
}
}
QString newname = "STR-"+date.toString("yyyyMM")+"."+STR_ext_EDF;
QString newname = "STR-"+date.toString("yyyyMMdd")+"."+STR_ext_EDF;
QString backupfile = strBackupPath+"/"+newname;
@ -1502,7 +1566,7 @@ void BackupSTRfiles( const QString strpath, const QString path, const QString st
else
QFile::exists(gzfile) && QFile::remove(gzfile);
STRmap[date] = STRFile(backupfile, stredf);
STRmap[date] = STRFile(backupfile, days, stredf);
} // end for walking the STR files list
#ifdef STR_DEBUG
qDebug() << "STRmap has" << STRmap.size() << "entries";

2
oscar/SleepLib/loader_plugins/resmed_loader.h
View File

@ -22,7 +22,7 @@
//********************************************************************************************
// Please INCREMENT the following value when making changes to this loaders implementation.
//
const int resmed_data_version = 13;
const int resmed_data_version = 14;
//
//********************************************************************************************

7
oscar/SleepLib/loader_plugins/viatom_loader.cpp
View File

@ -303,11 +303,8 @@ bool ViatomFile::ParseHeader()
//int spo2_avg = header[17];
//int spo2_min = header[18];
//int spo2_3pct = header[19]; // number of events
int spo2_4pct = header[20]; // number of events
if (header[21] > spo2_4pct) {
//CHECK_VALUE(header[21], 0); // sometimes nonzero; maybe spo2_5pct or something like that?
UNEXPECTED_VALUE(header[21], "< drops over 4%");
}
//int spo2_4pct = header[20]; // number of events
//CHECK_VALUE(header[21], 0); // ??? sometimes nonzero; maybe pulse spike, not a threshold of SpO2 or pulse, not always smaller than spo2_4pct
//int time_under_90pct = header[22] | (header[23] << 8); // in seconds
//int events_under_90pct = header[24]; // number of distinct events
//float o2_score = header[25] * 0.1;

11
oscar/SleepLib/profiles.cpp
View File

@ -566,11 +566,12 @@ void Profile::DataFormatError(Machine *m)
// Note: I deliberately haven't added a Profile help for this
if (backups) {
MachineLoader * loader = lookupLoader(m);
/* int c = */
mainwin->importCPAP(ImportPath(m->getBackupPath(), loader),
QObject::tr("Rebuilding from %1 Backup").arg(m->brand()));
// if ( c > 0 )
// m->info.version = loader->Version();
int c = mainwin->importCPAP(ImportPath(m->getBackupPath(), loader),
QObject::tr("Rebuilding from %1 Backup").arg(m->brand()));
if (c >= 0) {
// Make sure the updated version gets saved, even if there were no sessions to import.
mainwin->finishCPAPImport();
}
} else {
if (!p_profile->session->backupCardData()) {
// Automatic backups not available for Intellipap users yet, so don't taunt them..

1
oscar/SleepLib/session.h
View File

@ -194,6 +194,7 @@ class Session
t += slice.end - slice.start;
}
}
t = t / 3600000.0;
}
return t;
}

23
oscar/exportcsv.cpp
View File

@ -1,5 +1,6 @@
/* ExportCSV module implementation
/* ExportCSV module implementation
*
* Copyright (c) 2020 The OSCAR Team
* Copyright (c) 2011-2018 Mark Watkins <mark@jedimark.net>
*
* This file is subject to the terms and conditions of the GNU General Public
@ -180,24 +181,16 @@ void ExportCSV::on_exportButton_clicked()
countlist.append(CPAP_UserFlag2);
countlist.append(CPAP_PressurePulse);
avglist.append(CPAP_Pressure);
avglist.append(CPAP_IPAP);
avglist.append(CPAP_EPAP);
avglist.append(CPAP_FLG); // Pholynyk, 25Aug2015, add ResMed Flow Limitation
QVector<ChannelID> statChannels = { CPAP_Pressure, CPAP_PressureSet, CPAP_IPAP, CPAP_IPAPSet, CPAP_EPAP, CPAP_EPAPSet, CPAP_FLG };
for (auto & chan : statChannels) {
avglist.append(chan);
p90list.append(chan);
maxlist.append(chan);
}
p90list.append(CPAP_Pressure);
p90list.append(CPAP_IPAP);
p90list.append(CPAP_EPAP);
p90list.append(CPAP_FLG);
float percentile=p_profile->general->prefCalcPercentile()/100.0; // Pholynyk, 18Aug2015
EventDataType percent = percentile; // was 0.90F
maxlist.append(CPAP_Pressure); // Pholynyk, 18Aug2015, add maximums
maxlist.append(CPAP_IPAP);
maxlist.append(CPAP_EPAP);
maxlist.append(CPAP_FLG);
// Not sure this section should be translateable.. :-/
if (ui->rb1_details->isChecked()) {
header = tr("DateTime") + sep + tr("Session") + sep + tr("Event") + sep + tr("Data/Duration");

2
oscar/logger.cpp
View File

@ -72,7 +72,7 @@ void initializeLogger()
s_LoggerRunning.lock(); // wait until the thread begins running
s_LoggerRunning.unlock(); // we no longer need the lock
}
qInstallMessageHandler(MyOutputHandler);
qInstallMessageHandler(MyOutputHandler); // NOTE: comment this line out when debugging a crash, otherwise the deferred output will mislead you.
if (b) {
qDebug() << "Started logging thread";
} else {

10
oscar/main.cpp
View File

@ -196,11 +196,11 @@ bool migrateFromSH(QString destDir) {
if (!file.exists() || !dirP.exists()) { // It doesn't have a Preferences.xml file or a Profiles directory in it
// Not a new directory.. nag the user.
if (QMessageBox::warning(nullptr, STR_MessageBox_Error,
QObject::tr("The folder you chose does not contain valid SleepyHead data.") +
"\n\n"+QObject::tr("You cannot use this folder:")+" " + datadir ), QMessageBox::Ok) {
continue; // Nope, don't use it, go around the loop again
}
QMessageBox::warning(nullptr, STR_MessageBox_Error,
QObject::tr("The folder you chose does not contain valid SleepyHead data.") +
"\n\n"+QObject::tr("You cannot use this folder:")+" " + datadir,
QMessageBox::Ok);
continue; // Nope, don't use it, go around the loop again
}
qDebug() << "Migration folder is" << datadir;

10
oscar/mainwindow.cpp
View File

@ -743,7 +743,8 @@ void MainWindow::finishCPAPImport()
GenerateStatistics();
profileSelector->updateProfileList();
welcome->refreshPage();
if (welcome)
welcome->refreshPage();
if (overview) { overview->ReloadGraphs(); }
if (daily) {
@ -2504,10 +2505,17 @@ void MainWindow::on_actionImport_Viatom_Data_triggered()
#if defined(Q_OS_WIN)
// Windows can't handle this name filter.
w.setOption(QFileDialog::DontUseNativeDialog, true);
// And since the non-native dialog can't select both directories and files,
// it needs the following to enable selecting multiple files.
w.setFileMode(QFileDialog::ExistingFiles);
#endif
if (w.exec() == QFileDialog::Accepted) {
QString filename = w.selectedFiles()[0];
if (w.selectedFiles().size() > 1) {
// The user selected multiple files in a directory, so use the parent directory as the filename.
filename = QFileInfo(filename).absoluteDir().canonicalPath();
}
int c = viatom.Open(filename);
if (c > 0) {

2
oscar/mainwindow.h
View File

@ -164,6 +164,7 @@ class MainWindow : public QMainWindow
void setStatsHTML(QString html);
int importCPAP(ImportPath import, const QString &message);
void finishCPAPImport();
void startImportDialog() { on_action_Import_Data_triggered(); }
@ -365,7 +366,6 @@ class MainWindow : public QMainWindow
private:
QString getMainWindowTitle();
void importCPAPBackups();
void finishCPAPImport();
QList<ImportPath> detectCPAPCards();
QList<ImportPath> selectCPAPDataCards(const QString & prompt);
void importCPAPDataCards(const QList<ImportPath> & datacards);

2
oscar/oscar.pro
View File

@ -305,6 +305,7 @@ SOURCES += \
SleepLib/serialoximeter.cpp \
SleepLib/loader_plugins/md300w1_loader.cpp \
Graphs/gSessionTimesChart.cpp \
Graphs/gPressureChart.cpp \
logger.cpp \
SleepLib/machine_common.cpp \
SleepLib/loader_plugins/weinmann_loader.cpp \
@ -383,6 +384,7 @@ HEADERS += \
SleepLib/serialoximeter.h \
SleepLib/loader_plugins/md300w1_loader.h \
Graphs/gSessionTimesChart.h \
Graphs/gPressureChart.h \
logger.h \
SleepLib/loader_plugins/weinmann_loader.h \
Graphs/gdailysummary.h \

4
oscar/overview.cpp
View File

@ -1,5 +1,6 @@
/* Overview GUI Implementation
/* Overview GUI Implementation
*
* Copyright (c) 2020 The Oscar Team
* Copyright (c) 2011-2018 Mark Watkins <mark@jedimark.net>
*
* This file is subject to the terms and conditions of the GNU General Public
@ -23,6 +24,7 @@
#include "Graphs/gXAxis.h"
#include "Graphs/gLineChart.h"
#include "Graphs/gYAxis.h"
#include "Graphs/gPressureChart.h"
#include "cprogressbar.h"
#include "mainwindow.h"