diff --git a/.gitignore b/.gitignore
index 3373439a..f34ae412 100644
--- a/.gitignore
+++ b/.gitignore
@@ -44,3 +44,6 @@ Makefile*
 .vscode
 *.bak
 *~
+
+#Doxygen output does not go in repository
+doxydoc
\ No newline at end of file
diff --git a/Doxyfile b/Doxyfile
index e91bbeeb..c0accd20 100644
--- a/Doxyfile
+++ b/Doxyfile
@@ -1,5 +1,18 @@
 # Doxyfile 1.7.4
-
+#
+# Required to run:
+#       Doxygen (http://www.doxygen.nl/)
+#       GraphViz (https://www.graphviz.org/)
+#
+# Usage:
+#   1) put GraphViz bin directory in your PATH
+#   2) make oscar-code the current directory
+#   3) Run doxygen with no parameters.  Output will be placed
+#      in doxygen directory.  (.gitignore excludes doxygen directory from git.)
+#
+#
+#
+#
 # This file describes the settings to be used by the documentation system
 # doxygen (www.doxygen.org) for a project.
 #
@@ -25,7 +38,7 @@ DOXYFILE_ENCODING      = UTF-8
 # The PROJECT_NAME tag is a single word (or a sequence of words surrounded
 # by quotes) that should identify the project.
 
-PROJECT_NAME           = OSCR
+PROJECT_NAME           = OSCAR
 
 # The PROJECT_NUMBER tag can be used to enter a project or revision number.
 # This could be handy for archiving the generated documentation or
@@ -37,21 +50,22 @@ PROJECT_NUMBER         = 1.0.x
 # for a project that appears at the top of each page and should give viewer
 # a quick idea about the purpose of the project. Keep the description short.
 
-PROJECT_BRIEF          = OpenSource CPAP Review Software
+PROJECT_BRIEF          = OpenSource CPAP Analysis Reporter
 
 # With the PROJECT_LOGO tag one can specify an logo or icon that is
 # included in the documentation. The maximum height of the logo should not
 # exceed 55 pixels and the maximum width should not exceed 200 pixels.
 # Doxygen will copy the logo to the output directory.
 
-PROJECT_LOGO           = ./docs/logo.png
+#PROJECT_LOGO           = ./docs/logo.png
+PROJECT_LOGO           = ./oscar/icons/logo-lm.png
 
 # The OUTPUT_DIRECTORY tag is used to specify the (relative or absolute)
 # base path where the generated documentation will be put.
 # If a relative path is entered, it will be relative to the location
 # where doxygen was started. If left blank the current directory will be used.
 
-OUTPUT_DIRECTORY       = ./docs/doxygen
+OUTPUT_DIRECTORY       = ./doxydoc
 
 # If the CREATE_SUBDIRS tag is set to YES, then doxygen will create
 # 4096 sub-directories (in 2 levels) under the output directory of each output
@@ -610,7 +624,8 @@ WARN_LOGFILE           =
 # directories like "/usr/src/myproject". Separate the files or directories
 # with spaces.
 
-INPUT                  = ./ ./Graphs ./SleepLib  ./SleepLib/loader_plugins
+#INPUT                  = ./ ./Graphs ./SleepLib  ./SleepLib/loader_plugins
+INPUT                  = ./oscar ./oscar/Graphs ./oscar/SleepLib  ./oscar/SleepLib/loader_plugins
 
 # This tag can be used to specify the character encoding of the source files
 # that doxygen parses. Internally doxygen uses the UTF-8 encoding, which is